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Parker, C. J.

Publications and source records attributed to Parker, C. J..

2 recordsLinked to original sources

A Whole-Mouse-Brain Model of Coupled Neural Masses: Analysis of Network Dynamics

Neural mass models coupled through empirical structural connectomes are widely used to simulate whole-brain activity, but the dynamics of the resulting large, delay-coupled networks are rarely analyzed directly. We present a dynamical systems analysis of 434 Jansen-Rit neural masses coupled by the Allen Mouse Brain Connectivity Atlas at the canonical single-node parameter values. Pseudo-arclength continuation of the network equilibria in the global coupling scale and in the baseline external input, with stability determined from the characteristic roots of the delayed linearization by Beyn's contour-integral method, indicates where the network must oscillate and where it can rest. Simulations show that the oscillatory regime is chaotic: the maximum Lyapunov exponent is positive for the empirical connectome, grows with network size and coupling scale, and is insensitive to the conduction delays, but it is suppressed when the arrangement of connection weights is flattened, shuffled, or rewired. The same weight modifications that suppress chaos drive the network toward full synchrony and abolish metastability, as measured by the Kuramoto order parameter. We discuss the consequences of these findings for fitting whole-brain neural mass models to empirical data.

neuroscience↗

Precise measurement of rodent drinking using CLiQR (Capacitive Lick Quantification in Rodents)

Accurate quantification of rodent licking behavior is essential for studies of fluid intake, including investigations of alcohol use disorder and obesity. Lickometry systems vary widely in sensing modality, cost, scalability, and data resolution. Also, many available systems require specialized housing or store only binary lick/no lick data based on thresholding. Here, we present CLiQR (Capacitive Lick Quantification in Rodents), an open-source capacitive lickometry system designed for high-throughput recording of licking behavior in home-cage environments while preserving the full capacitance time series. The system uses MPR121 capacitive sensors connected to custom metal-tipped serological pipette sippers and a centralized desktop computer to record data from up to 24 mice concurrently, with capacity for two-bottle choice experiments. Validation experiments demonstrated that the capacitive signals reliably distinguish licking from non-licking interactions. Total lick counts showed a positive correlation with measured fluid consumption (R2 = 0.849, p < 0.0001), confirming that detected events provide a meaningful proxy for intake. All information necessary to reproduce the system is shared openly in this manuscript and online. By combining scalability, full-trace data acquisition, and low cost, CLiQR provides a flexible and extensible platform for high-throughput behavioral neuroscience experiments and enables retrospective improvement of lick-detection algorithms.

animal behavior and cognition↗