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Paquin-Lefebvre, F.

Publications and source records attributed to Paquin-Lefebvre, F..

3 recordsLinked to original sources

Electrodiffusion analysis of concentration and voltage changes in thin cylindrical domains using cross-diffusion modelling

A major challenge in neuroscience is to predict how currents in nanodomains affect voltage and ionic concentrations. Cable and Rall theory provide analytic current-voltage relations by neglecting concentration gradients, and the impact of concentration gradients is usually studied numerically with the Poisson-Nernst-Planck (PNP) model. A precise quantitative understanding of the combined dynamics remains limited because analytic current-voltage-concentration relations are missing. In this work we derive such relations using a novel approach based on cross-diffusion equations. For narrow cylindrical domains, we derive time-dependent and steady-state expressions that explicitly show how currents affect voltage and ionic concentrations. We find that the influx of only one ion can significantly change the concentrations of all the other ions even if no channels for these ions are present. After a current injection we compute a biphasic voltage transient where the small-time asymptotic corresponds to the steady-state solution of the cable equation. We show that the accuracy of cable theory prediction for the voltage depends on how the current is distributed among the various ions. Finally, we develop an iterative method to accurately compute steady-state profiles for voltage and concentrations using first-order results by subdividing a cylinder into small segments.

biophysics↗

Synaptic Input Triggers On-Demand Spine-Specific Mitochondrial ATP Production and Delivery

Synaptic activity imposes acute energy demands, especially for restoring ionic gradients via pumps and exchangers that require ATP. While mitochondria are positioned near dendritic spines to meet this demand, how ATP is produced and delivered with spatial precision remains unclear. Here, using high-resolution calcium and ATP imaging, immuno-cytochemistry, and computational modeling, we demonstrate that synaptic input--but not back-propagating action potentials (bAPs)--triggers on-demand mitochondrial ATP production. This occurs only in spines containing a spine apparatus (SA), where calcium-induced calcium release (CICR) activates mitochondrial calcium uniporters (MCUs), initiating ATP synthesis. We show that ATP delivery is spatially constrained to mitochondrial regions facing the spine base, where ATP-synthase is enriched. Importantly, ATP produced elsewhere on the mitochondrial surface tends to diffuse into the dendrite. We further demonstrate that the delivery of ATP to the spine head is geometrically optimized: an intermediate spine neck length maximizes delivery efficiency. Mathematical modeling and simulations revealb that the time scale for ATP to reach and refill all head-localized exchangers is on the order of hundreds of milliseconds--fast enough to meet local metabolic needs. The present findings establish a mechanism in which nanoscale calcium signaling and mitochondrial architecture together ensure rapid, spatially targeted ATP delivery, tightly coupled to synaptic activity.

neuroscience↗

Analyzing photoactivation with diffusion models to study transport in the Endoplasmic Reticulum network

Photoactivation is a paradigm consisting in local molecular fluorescent activation by laser illumination in a chosen region (source) while measuring the concentration at a target region. Data-driven modeling is concern with the following questions: how from the measurement in these two regions, is it possible to infer the properties of molecular propagation? How is it possible to use such reponses to infer motions occurring in networks such as the endoplasmic reticulum? In this article, we present a data-driven analysis based on diffusion-transport models and numerical simulations to interpret the photoactivation dynamics and extract biophysical parameters. Finally we discuss modeling approaches to reconstruct local network properties from photoactivation transients.

cell biology↗