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Biology subjects

Paes, G.

Publications and source records attributed to Paes, G..

2 recordsLinked to original sources

Plant Cell Wall Enzymatic Deconstruction: Bridging the Gap Between Micro and Nano Scales

Understanding and overcoming the resistance of plant cell wall to enzymatic deconstruction is crucial to achieve a sustainable and economical conversion of plant biomass to bio-based products as alternatives to petroleum-based products. Despite the significant scientific advances over the past decades, the plant cell wall deconstruction at cell and tissue scales has remained under-investigated. In this study, to quantitatively characterize plant cell wall deconstruction, we set up an original imaging pipeline by combining time-lapse 4D (space + time) fluorescence confocal imaging, and a novel computational tool, to track and quantify cell wall deconstruction at cell and tissue scales offering a digital representation of cell wall deconstruction. Using this pipeline on poplar wood sections, we computed dynamics of several cellular parameters (e.g. cell wall volume, surface area, and number of cell neighbors) while measuring cellulose conversion. The results showed that the effect of enzymatic deconstruction at the cell scale is predominantly noticeable in terms of cell wall volume reduction rather than a significant decrease in surface area and accessible surface area. The results also revealed a negative correlation between pre-hydrolysis 3D cell wall compactness measures and volumetric cell wall deconstruction. The strength of this correlation was modulated by enzymatic activity. Combining cell wall compactness with the number of neighboring cells as a tissue-scale parameter yielded a stronger correlation. Our results also revealed a strong positive correlation between average volumetric cell wall deconstruction and cellulose conversion, thus establishing a link between key parameters and bridging the gap between nano and micro scales.

biochemistry↗

Fluorescence lifetime imaging as an in situ and label-free readout for the chemical composition of lignin

Important structures and functions within living organisms rely on naturally fluorescent polymeric molecules such as collagen, keratin, elastin, resilin, or lignin. Theoretical physics predict that fluorescence lifetime of these polymers is related to their chemical composition. We verified this prediction for lignin, a major structural element in plant cell walls and one of the most abundant components of wood. Lignin is composed of different types of phenylpropanoid units, and its composition affects its properties, biological functions, and the utilization of wood biomass. We carried out fluorescence lifetime imaging microscopy (FLIM) measurements of wood cell wall lignin in a population of 90 hybrid aspen trees genetically engineered to display differences in cell wall chemistry and structure. We also measured wood cell wall composition by classical analytical methods in the wood cell walls of these trees. Using statistical modelling and machine learning algorithms, we identified parameters of fluorescence lifetime that predict the content of S-type and G-type lignin units, the two main types of units in the lignin of angiosperm plants. Finally, we show how quantitative measurements of lignin chemical composition by FLIM can reveal the dynamics of lignin biosynthesis in two different biological contexts, including in vivo while lignin is being synthesized in the walls of living cells.

plant biology↗