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Ortiz, M. S.

Publications and source records attributed to Ortiz, M. S..

2 recordsLinked to original sources

The Parasite Intraerythrocytic Cycle and Human Circadian Cycle are Coupled During Malaria Infection

During infections with malaria parasites P. vivax, patients exhibit rhythmic fevers every 48 hours. These fever cycles correspond with the time parasites take to traverse the Intraerythrocytic Cycle (IEC) and may be guided by a parasite-intrinsic clock. Different species of Plasmodia have cycle times that are multiples of 24 hours, suggesting they may be coordinated with the host circadian clock. We utilized an ex vivo culture of whole blood from patients infected with P. vivax to examine the dynamics of the host circadian transcriptome and the parasite IEC transcriptome. Transcriptome dynamics revealed that the phases of the host circadian cycle and the parasite IEC were correlated across multiple patients, suggesting that the cycles are coupled. In mouse model systems, host-parasite cycle coupling appears to provide a selective advantage for the parasite. Thus, understanding how host and parasite cycles are coupled in humans could enable anti-malarial therapies that disrupt this coupling.

systems biology↗

PATTIE: Publication access through tiered interaction & exploration

In this work we present Publication Access Through Tiered Interaction & Exploration (PATTIE) - an information foraging, sense-making, and exploratory spatial-semantic information retrieval (IR) system (http://pattie.unc.edu/plos). Non-spatial, spatial IR systems, and some recent studies focused on their principal functions are discussed and compared. To interactively work through a use-case from the biomedical domain, instructions are provided for readers to conduct exploratory searches directly on the PLOS archive based on the software embedded in the online version of this paper (http://vzlib.unc.edu/software/). To carefully evaluate some of the critical parameters of the PATTIE algorithm, and the core functions of the implemented system, a set of experiments were conducted. Along with details on the experimental methods and their rationale, key findings from the experiments are analyzed and presented. Finally, with an eye toward the future of software-embedded scientific papers, their potential benefits for supporting direct engagement with scientific content, replication, and validation are discussed.

scientific communication and education↗