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Orata, F.

Publications and source records attributed to Orata, F..

2 recordsLinked to original sources

The role and effects of the phage T4 Ac protein on infection

The ac gene from T4 and T4-like phages is associated with susceptibility to acriflavine, an acridine that intercalates with DNA, disrupting replication and transcription. While this interference has been shown to inhibit phage replication - resulting in reduced frequency of infection and viral titer at the population level - and mutation or knockout of the ac gene renders the phage resistant to acriflavine, the role of the ac gene product, Ac, has not yet been elucidated. This study aims to further explore the role of the ac gene in phage infection by expressing it in Escherichia coli and evaluating its effects on the host under varying growth conditions and during phage infection, both in the presence and absence of acriflavine. E. coli induced to express the ac gene from phage T4 showed an increased susceptibility to acriflavine compared to the same strain not undergoing expression (non-induced) or not carrying the ac expression plasmid (empty). Moreover, in the presence of acriflavine, the parental phage T4 was not able to infect the host variants (induced, non-induced and empty), suggesting the Ac protein is involved in a potential membrane modification leading to acriflavine hindering infection. When the ac gene was deleted from the T4 phage (T4{Delta}ac), the mutated phage was capable of infecting the three host variants (empty, non-induced and induced) in the presence of acriflavine, showing resistance to this acridine. Based on experimental results and protein structure prediction, we propose that the Ac protein integrates into the bacterial host cell membrane and interacts with the AcrAB-TolC efflux pump, either altering its conformation or blocking its function, thereby preventing the excretion of acriflavine which accumulates in the cell and impedes DNA replication

microbiology↗

Vibrio tarriae sp. nov., a novel member of the Cholerae clade isolated from across the United States

A number of bacteria with close resemblance to Vibrio cholerae has been isolated over the years by the Centers for Disease Control and Prevention (CDC), which could not be assigned a proper taxonomic designation based on preliminary identification methods. Nine such isolates have been found to share 16S rRNA gene identity exceeding 99% with V. cholerae, yet DNA-DNA hybridization (60.4-62.1%) and average nucleotide identity values (94.4-95.1%) were below the species cut-off, indicating a potentially novel species. Phylogenetic analysis of core genomes places this group of isolates in a monophyletic clade, within the "Cholerae clade," but distinct from any other species. Extensive phenotypic characterization reveals unique biochemical properties that distinguish this novel species from V. cholerae. Comparative genomic analysis reveals a unique set of siderophore genes, suggesting that iron acquisition strategies could be vital for the divergence of the novel species from a common ancestor with V. cholerae. Based on genetic, phylogenetic, and phenotypic differences observed, we propose these isolates represent a novel species of the genus Vibrio, for which the name Vibrio tarriae sp. nov. is proposed. Strain 2521-89 (= DSM 112461 = CCUG 75318), isolated from lake water, is the type strain. Author NotesThe GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 2521-89 is MW773202.1. The genome sequences (genome assemblies) of strains 2521-89, 2523-88, 2015V-1076, 2016V-1018, 2016V-1062, 2017V-1038, 2017V-1070 and 2017V-1124 are deposited under the accession number NZ_CP022353.1, QKKG01000001.1, QKKH00000000.1, QKKI00000000.1, QKKJ00000000.1, QKKK00000000.1, QKKM00000000.1, and QKKN00000000.1, respectively. All the whole genome sequences are deposited under bioproject ID: PRJNA391152.

microbiology↗