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Biology subjects

Olsen, T. R.

Publications and source records attributed to Olsen, T. R..

3 recordsLinked to original sources

Not all cross-modal responses are explained by face movements

The meaning and functions of cross-modal sensory processing in the cortex is at the center of an ongoing debate. While some studies claim that such responses reflect genuine multisensory integration, others argue they are mere artifacts of stimulus-evoked movement or changes in internal state. We examined this issue by measuring face movements and neural activity in awake mouse primary auditory cortex (A1) and primary visual cortex (V1) during visual and auditory stimulation. Visual stimuli rarely evoked face movements, A1 responses to visual input remained robust even in the absence of movement, and optogenetic silencing of V1 reduced A1 visual responses, confirming a sensory origin of these cross-modal responses. These findings directly challenge the argument that cross- modal responses are purely movement-driven and emphasize that rather than assuming all cross-modal effects are artifactual, researchers must rigorously test each case. HighlightsO_LIUnlike auditory stimuli, visual stimuli rarely evoke face movements C_LIO_LIFace movements explain sound-evoked firing in VC but not visually evoked firing in AC C_LIO_LISilencing VC suppresses visually evoked firing in AC C_LIO_LIThese results confirm a sensory (rather than motor) origin of these responses C_LI

neuroscience↗

Scalable co-sequencing of RNA and DNA from individual nuclei

The ideal technology for directly investigating the relationship between genotype and phenotype would analyze both RNA and DNA genome-wide and with single-cell resolution. However, existing tools lack the throughput required for comprehensive analysis of complex tumors and tissues. We introduce a highly scalable method for jointly profiling DNA and expression following nucleosome depletion (DEFND-seq). In DEFND-seq, nuclei are nucleosome-depleted, tagmented, and separated into individual droplets for mRNA and genomic DNA barcoding. Once nuclei have been depleted of nucleosomes, subsequent steps can be performed using the widely available 10x Genomics droplet microfluidic technology and commercial kits without experimental modification. We demonstrate the production of high-complexity mRNA and gDNA sequencing libraries from thousands of individual nuclei from both cell lines and archived surgical specimens for associating gene expression phenotypes with both copy number and single nucleotide variants.

genomics↗

Microfluidic Isolation of Aptamers with Affinity towards Multiple Myeloma Monoclonal Immunoglobulins (M-Ig)

Multiple myeloma (MM) is a bone marrow cancer of resident plasma cells that affects 125,000 patients in the U.S. with [~] 30,000 new cases per year. Its signature is the clonal over-proliferation of a single plasma cell that secretes a patient specific monoclonal immunoglobulin (M-Ig). Detecting this patient specific M-Ig could allow sensitive detection of minimal residual disease in multiple myeloma from patient serum. Aptamers, single-stranded oligonucleotides with affinity and specificity to a target molecule, have recently been introduced as affinity reagents able to detect MM M-Igs. Here we adapt these benchtop M-Ig systematic evolution of ligands through exponential enrichment (SELEX) techniques to our bead integrated microfluidic SELEX (BIMS) device to rapidly generate patient specific aptamers. Using MM patient serum, we isolate patient M-Ig specific aptamers rapidly (runtime < 12 hours) with high affinity (KD < 20 nM) while consuming limited quantities of patient M-Ig (< 100 g).

bioengineering↗