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Biology subjects

Okoye, A.

Publications and source records attributed to Okoye, A..

3 recordsLinked to original sources

Sense-and-response to intracellular signaling via nucleocytoplasmic localization control of a synthetic transcription factor platform

Many therapeutically relevant signaling pathways are sensed inside the cell, yet a modular synthetic biology platform for responding to intracellular signaling at the post-translational level is lacking. Signaling pathways control the nuclear localization and activity of native transcription factors via phosphorylation of nuclear localization/export or cytoplasmic anchor sequences. Here, we apply this concept to develop a platform of nucleocytoplasmic localization tags (NCtags) that control the nuclear translocation of a synthetic transcription factor (synTF) for transgene induction in engineered cells. We identify human-based synTF components that are basally cytoplasmic and induce transgenes under the control of NCtags with minimal background. We demonstrate the modular nature of this platform through transcriptional reporter induction in response to a calcium-inducible NFAT-derived NCtag, and development of novel NCtags responsive to hyperosmolarity, cAMP, or logical combinations of cAMP and calcium. Multiple factors in the tumor microenvironment elevate cAMP in T cells, leading to reduced function. We demonstrate that NCtag-synTF fusions expressed in T cells can respond to endogenous sources of cAMP or calcium in breast cancer spheroids to induce transgene expression. Our use of human components and an all-in-one lentiviral vector encoding the NCtag-synTF-transgene system establishes this as a novel platform for sense-and-response inside therapeutic cells.

synthetic biology↗

Distinct phases of immune system programming during ART-suppressed immunodeficiency virus infection

People living with HIV (PLWH) on suppressive antiretroviral therapy (ART) can face non-AIDS complications, partially driven by chronic immune activation. To define immune perturbations during ART-suppressed viral infection, we performed longitudinal single-cell transcriptomic and plasma proteomic analysis of rhesus macaques infected with SIVmac239M and ART-treated for 70 weeks. We identified broad, bi-phasic immune changes. Acute infection involves an interferon-driven signature, correlated with viral replication, that largely resolves with viral control. Cell-associated virus correlated with interferon-stimulated genes in most tissues; however, this was blunted in gut-associated lymph nodes, a feature that may contribute to reservoir persistence. Separate alterations manifest 54-66 weeks-post-infection, after 40 weeks of viral suppression, including broad TGF-{beta} and NF-kB signaling and discrete bursts of inflammatory monocytes, largely restricted to bone marrow. These data highlight the biphasic remodeling of long-term ART-suppressed HIV, identifying specific tissues and cell populations with dysregulation, with implications for the treatment of PLWH.

immunology↗

The identity of human tissue-emigrant CD8+ T cells

Lymphocyte migration is essential for human adaptive immune surveillance. However, our current understanding of this process is rudimentary, because most human studies to date have been restricted to immunological analyses of blood and various tissues. To address this issue, we used an integrated approach to characterize tissue-emigrant immune cells in thoracic duct lymph (TDL). In humans and non-human primates, lymphocytes were by far the most abundant immune lineage population in efferent lymph, and a vast majority of these lymphocytes were T cells. Cytolytic CD8+ T cell subsets were clonotypically discrete and selectively confined to the intravascular circulation, persisting for months after inhibition of S1P-dependent tissue egress by FTY-720. In contrast, non-cytolytic CD8+ T cell subsets with stem-like epigenetic and transcriptional signatures predominated in tissues and TDL. Collectively, these data provide an atlas of the migratory immune system and define the nature of tissue-emigrant CD8+ T cells that recirculate via TDL.

immunology↗