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Okell, T. W.

Publications and source records attributed to Okell, T. W..

12 recordsLinked to original sources

From 3D Time-of-Flight Angiography to Accelerated 4D Arterial Spin Labeling Angiography: A Fast Few-Shot Transfer Learning Approach

PurposeTo develop a data-efficient deep learning framework for rapid reconstruction of highly accelerated 4D arterial spin labeling (ASL) magnetic resonance angiography (MRA) with robust generalization using extremely limited acquired data, addressing the challenges of prolonged acquisition and reconstruction time. MethodsA simulation-driven, few-shot transfer learning approach was adopted by leveraging publicly available 3D time-of-flight (TOF)-MRA data to generate realistic multi-coil complex-valued pseudo-ASL k-space datasets for large-scale pre-training. A 3D unrolled reconstruction network was trained on this simulated data using a histogram-weighted loss and subsequently extended to 4D using lightweight temporal fusion modules. Fine-tuning was performed using only two experimentally acquired 4D ASL-MRA datasets. The method was evaluated on retrospectively and prospectively undersampled Cartesian 4D ASL-MRA data acquired at 3T and compared with compressed sensing (CS) and locally low-rank (LLR) reconstructions. ResultsThe proposed method achieved superior reconstruction quality compared with CS and LLR, with improved vessel depiction, particularly in distal branches, and enhanced temporal fidelity. Quantitative evaluation demonstrated higher vessel-masked peak signal-to-noise ratio and structural similarity index measure, along with increased error entropy, indicating reduced noise and structured artifacts. The initial pre-trained model already outperformed conventional methods, while additional 4D fine-tuning further improved performance. Robust reconstruction was demonstrated in prospectively undersampled data and multi-slab acquisitions, enabling large-coverage, time-resolved angiography within clinically feasible scan times (4-6 min). ConclusionsSimulation-driven pre-training combined with few-shot fine-tuning enables accurate and rapid reconstruction of highly accelerated 4D ASL-MRA in data-limited settings. The proposed framework provides a practical pathway toward clinically feasible, non-contrast dynamic cerebrovascular imaging.

neuroscience↗

Combined Angiographic, Structural and Perfusion Radial Imaging using Arterial Spin Labeling

PurposeTo develop a non-contrast MRI method for the simultaneous acquisition of time-resolved 3D angiographic, perfusion and multi-contrast T1-weighted structural brain images in a single six-minute acquisition. MethodsThe proposed Combined Angiographic, Structural and Perfusion Radial Imaging using Arterial Spin Labeling (CASPRIA) pulse sequence uses pseudocontinuous arterial spin labeling (PCASL) to label inflowing blood, an inversion pulse to provide background suppression and T1-weighted contrast, and a continuous 3D golden ratio spoiled gradient echo readout. Label-control subtraction isolates the blood signal and can be flexibly reconstructed at high/low spatiotemporal resolution for angiography/perfusion imaging. The mean signal retains the static tissue, allowing T1-weighted structural images to be reconstructed at different effective inversion times. CASPRIA was compared with conventional time-of-flight (TOF) angiography, 3D-gradient and spin echo (3D-GRASE) PCASL perfusion imaging and magnetization-prepared rapid gradient echo (MP-RAGE) structural imaging (10 minutes total) in healthy volunteers. ResultsCASPRIA gave improved distal vessel visibility and fewer artefacts than TOF angiography, whilst also providing dynamic information, with blood transit time and dispersion maps. CASPRIA perfusion images were comparable to 3D-GRASE data, but without through-slice blurring or artefacts in inferior brain regions. Comparable quantitative cerebral blood flow maps were produced, with CASPRIA being significantly more repeatable. Structural CASPRIA images were comparable to MP-RAGE, but also yielded a range of T1-weighted contrasts and allowed quantitative T1 maps to be estimated. ConclusionCASPRIA is an efficient single acquisition to provide intrinsically co-registered quantitative information about brain blood flow and structure that has considerable advantages over conventional methods.

neuroscience↗

Few-shot learning for highly accelerated 3D time-of-flight MRA reconstruction

PurposeTo develop a deep learning-based reconstruction method for highly accelerated 3D time-of-flight magnetic resonance angiography (TOF-MRA) that achieves high-quality reconstruction with robust generalization using extremely limited acquired raw data, addressing the challenge of time-consuming acquisition of high-resolution, whole-head angiograms. MethodsA novel few-shot learning-based reconstruction framework is proposed, featuring a 3D variational network specifically designed for 3D TOF-MRA that is pre-trained on simulated complex-valued, multi-coil raw k-space datasets synthesized from diverse open-source magnitude images and fine-tuned using only two single-slab experimentally acquired datasets. The proposed approach was evaluated against existing methods on acquired retrospectively undersampled in vivo k-space data from five healthy volunteers and on prospectively undersampled data from two additional subjects. ResultsThe proposed method achieved superior reconstruction performance on experimentally acquired in vivo data over comparison methods, preserving most fine vessels with minimal artifacts with up to 8-fold acceleration. Compared to other simulation techniques, the proposed method generated more realistic raw k-space data for 3D TOF-MRA. Consistently high-quality reconstructions were also observed on prospectively undersampled data. ConclusionsBy leveraging few-shot learning, the proposed method enabled highly accelerated 3D TOF-MRA relying on minimal experimentally acquired data, achieving promising results on both retrospective and prospective in vivo data while outperforming existing methods. Given the challenges of acquiring and sharing large raw k-space datasets, this holds significant promise for advancing research and clinical applications in high-resolution, whole-head 3D TOF-MRA imaging.

neuroscience↗

SNR-Efficient Whole-Brain Pseudo-Continuous Arterial Spin Labeling Perfusion Imaging at 7 Tesla

PurposeTo optimize pseudo-continuous arterial spin labeling (PCASL) parameters to maximize SNR efficiency for RF power constrained whole brain perfusion imaging at 7 T. MethodsWe used Bloch simulations of pulsatile laminar flow to optimize the PCASL parameters for maximum SNR efficiency, balancing labeling efficiency and total RF power. The optimization included adjusting the inter-RF pulse spacing (TRPCASL), mean B1+ (B1 ave), slice-selective gradient amplitude (Gmax), and mean gradient amplitude (Gave). In vivo data were acquired from four volunteers at 7 T to validate the optimized parameters. Dynamic B0-shimming and flip angle adjustments were utilized to avoid needing to make the PCASL parameters robust to B0/B1+ variations. ResultsThe optimized PCASL parameters achieved a significant (3.1x) reduction in RF power while maintaining high labeling efficiency. This allowed for longer label durations and minimized deadtime, and resulted in a 126% improvement in SNR efficiency in vivo compared to a previously proposed protocol. Additionally, the static tissue response was improved, reducing the required distance between labeling plane and imaging volume. ConclusionThese optimized PCASL parameters provide a robust and efficient approach for whole brain perfusion imaging at 7 T, with significant improvements in SNR efficiency and reduced SAR burden.

neuroscience↗

Dynamic B0 field shimming for improving pseudo-continuous arterial spin labeling at 7 Tesla

PurposeB0 inhomogeneity within the brain-feeding arteries is a major issue for pseudo-continuous arterial spin labeling (PCASL) at 7T because it reduces labeling efficiency and leads to a loss of perfusion signal. This study aimed to develop a vessel-specific dynamic B0 field shimming method for 7T PCASL to enhance labeling efficiency by correcting off-resonance in the arteries within the labeling region. MethodsWe implemented a PCASL sequence with dynamic B shimming at 7T that compensates for B0 field offsets at the brain-feeding arteries by updating linear shimming terms and adding a phase increment to the PCASL RF pulses. Rapidly acquired vessel-specific B field maps were used to calculate dynamic shimming parameters. We evaluated both 2D and 3D variants of our method, comparing their performance against established global frequency offset and optimal-encoding-scheme (OES)-based corrections. Cerebral blood flow (CBF) maps were quantified before and after corrections. CBF values from different methods in the whole brain, white matter, and grey matter regions were compared. ResultsAll off-resonance correction methods significantly enhanced perfusion signals across the brain. The proposed vessel-specific dynamic B shimming method improved labeling efficiency while maintaining optimal static shimming in the imaging region. Perfusion-weighted images demonstrated the superiority of 3D dynamic B shimming method compared to global or 2D-based correction approaches. CBF analysis revealed that 3D dynamic B shimming significantly increased CBF values relative to the other methods. ConclusionOur proposed dynamic B0 shimming method offers a significant advancement in PCASL robustness and effectiveness, enabling full utilization of 7T ASLs high sensitivity and spatial resolution.

biophysics↗

Ultra-high temporal resolution 4D angiography using arterial spin labeling with subspace reconstruction

PurposeTo achieve ultra-high temporal resolution non-contrast 4D angiography with improved spatiotemporal fidelity. MethodsContinuous data acquisition using 3D golden-angle sampling following an arterial spin labeling preparation allows for flexibly reconstructing 4D dynamic angiograms at arbitrary temporal resolutions. However, k-space data is often temporally "binned" before image reconstruction, negatively affecting spatiotemporal fidelity and limiting temporal resolution. In this work, a subspace was extracted by linearly compressing a dictionary constructed from simulated curves of an angiographic kinetic model. The subspace was used to represent and reconstruct the voxelwise signal timecourse at the same temporal resolution as the data acquisition without temporal binning. Physiological parameters were estimated from the resulting images using a Bayesian fitting approach. A group of 8 healthy subjects were scanned and the in-vivo results reconstructed by different methods were compared. Due to the difficulty of obtaining ground truth 4D angiograms with ultra-high temporal resolution, the in-vivo results were cross-validated with numerical simulations. ResultsThe proposed method enables 4D time-resolved angiography with much higher temporal resolution (14.7 ms) than previously reported ([~]50 ms) whilst maintaining high spatial resolution (1.1 mm isotropic). Blood flow dynamics were depicted in greater detail, thin vessel visibility was improved, and the estimated physiological parameters also exhibited more realistic spatial patterns with the proposed method. ConclusionIncorporating a subspace compressed kinetic model into the reconstruction of 4D ASL angiograms notably improved the temporal resolution and spatiotemporal fidelity, which was subsequently beneficial for accurate physiological modeling.

neuroscience↗

Efficient 3D cone trajectory design for improved combined angiographic and perfusion imaging using arterial spin labeling

PurposeTo improve the spatial resolution and repeatability of a non-contrast MRI technique for simultaneous time resolved 3D angiography and perfusion imaging by developing an efficient 3D cone trajectory design. MethodsA novel parameterized 3D cone trajectory design incorporating the 3D Golden Angle was integrated into 4D combined angiography and perfusion using radial imaging and arterial spin labeling (CAPRIA) to achieve higher spatial resolution and sampling efficiency for both dynamic angiography and perfusion imaging with flexible spatiotemporal resolution. Numerical simulations and physical phantom scanning were used to optimize the cone design. Eight healthy volunteers were scanned to compare the original radial trajectory in 4D CAPRIA with our newly designed cone trajectory. A locally low rank reconstruction method was used to leverage the complementary k-space sampling across time. ResultsThe improved sampling in the periphery of k-space obtained with the optimized 3D cone trajectory resulted in improved spatial resolution compared with the radial trajectory in phantom scans. Improved vessel sharpness and perfusion visualization were also achieved in vivo. Less dephasing was observed in the angiograms due to the short echo time of our cone trajectory and the improved k-space sampling efficiency also resulted in higher repeatability compared to the original radial approach. ConclusionThe proposed 3D cone trajectory combined with 3D Golden Angle ordering resulted in improved spatial resolution and image quality for both angiography and perfusion imaging and could potentially benefit other applications that require an efficient sampling scheme with flexible spatial and temporal resolution.

neuroscience↗

Optimization of 4D Combined Angiography and Perfusion using Radial Imaging and Arterial Spin Labeling

PurposeTo extend and optimize a non-contrast MRI technique to obtain whole head 4D (time-resolved 3D) angiographic and perfusion images from a single scan. Methods4D combined angiography and perfusion using radial imaging and arterial spin labeling (CAPRIA) uses pseudocontinuous labeling with a 3D golden ratio ("koosh ball") readout to continuously image the blood water as it travels through the arterial system and exchanges into the tissue. High spatial/temporal resolution angiograms and low spatial/temporal resolution perfusion images can be flexibly reconstructed from the same raw k-space data at any timepoint within the readout. A constant flip angle (CFA) and a quadratic variable flip angle (VFA) excitation schedule were optimized through simulations and tested in healthy volunteers. A conventional sensitivity encoding (SENSE) reconstruction was compared against a locally low rank (LLR) reconstruction, which leverages spatiotemporal correlations to improve reconstruction quality. Differences in image quality were assessed through split-scan repeatability. ResultsThe optimized VFA schedule (2-9{degrees}) reduced initial signal attenuation whilst boosting the signal at later timepoints, resulting in a significant (p < 0.001) improvement in image quality (up to 84%), particularly for the lower SNR perfusion images. The LLR reconstruction provided effective denoising without biasing the signal timecourses, significantly improving angiographic and perfusion imaging repeatability (up to 143%, p < 0.001) and enabling the clear depiction of small distal vessels and late tissue perfusion. Conclusion4D CAPRIA can be optimized using a VFA schedule and LLR reconstruction to yield whole head 4D angiograms and perfusion images from a single scan.

neuroscience↗

The Set Increment with Limited Views Encoding Ratio (SILVER) Method for Optimizing Radial Sampling of Dynamic MRI

PurposeTo present and assess a method for choosing a fixed increment between spokes in radially sampled MRI that results in higher SNR than other radial sampling increments. Theory and MethodsSampling uniformity contributes to image SNR when reconstructed using linear methods. Thus, for a radial trajectory, uniformly spaced sampling is ideal. However, uniform sampling lacks post-acquisition reconstruction flexibility, which is often needed in dynamic imaging. Golden ratio-based increments are often used for this purpose. The method presented here, Set Increment with Limited Views Encoding Ratio (SILVER), optimizes sampling uniformity when a limited number of temporal resolutions are required. With SILVER, an optimization algorithm finds the angular increment that provides the highest uniformity for a pre-defined set of reconstruction window sizes. SILVER was tested over multiple sets and assessed in terms of uniformity, noise amplification, and SNR both in simulations and in acquisitions of a phantom and healthy volunteers. ResultsThe proposed algorithm produced trajectories that, for the optimized window sizes, had higher uniformity and lower image noise than golden ratio sampling both in a simulated single-coil system and in a multi-coil system, assessed using simulation, phantom, and in vivo experiments. The noise in SILVER optimized trajectories was comparable to uniformly distributed spokes whilst retaining flexibility in reconstruction at multiple temporal resolutions. In a resting state fMRI experiment, tSNR increases at different spatial and temporal resolutions ranged from 21-72%. ConclusionSILVER is a simple addition to any sequence currently using golden ratio sampling and significantly increases sampling efficiency and SNR.

neuroscience↗

Designing and Comparing Optimised Pseudo-Continuous Arterial Spin Labelling Protocols for Measurement of Cerebral Blood Flow

1.Arterial Spin Labelling (ASL) is a non-invasive, non-contrast, perfusion imaging technique which is inherently SNR limited. It is, therefore, important to carefully design scan protocols to ensure accurate measurements. Many pseudo-continuous ASL (PCASL) protocol designs have been proposed for measuring cerebral blood flow (CBF), but it has not yet been demonstrated which design offers the most accurate and repeatable CBF measurements. In this work, a wide range of literature PCASL protocols, including single-delay, sequential and time-encoded multi-timepoint protocols, and several novel protocol designs, which are hybrids of time-encoded and sequential multi-timepoint protocols, were first optimised using a Cramer-Rao Lower Bound framework and then compared for CBF accuracy and repeatability using Monte Carlo simulations and in vivo experiments. It was found that several multi-timepoint protocols produced more confident, accurate, and repeatable CBF estimates than the single-delay protocol, while also generating maps of arterial transit time. One of the novel hybrid protocols, HybridT1-adj, was found to produce the most confident, accurate and repeatable CBF estimates of all protocols tested in both simulations and in vivo (24%, 47%, and 28% more confident, accurate, and repeatable than single-PLD in vivo). The HybridT1-adj protocol makes use of the best aspects of both time-encoded and sequential multi-timepoint protocols and should be a useful tool for accurately and efficiently measuring CBF.

neuroscience↗

Serial quantification of brain oxygenation in acute stroke using streamlined-qBOLD

It has been proposed that metabolic markers of baseline brain oxygenation have a role to play in the early identification of the ischemic penumbra. Streamlined-qBOLD is a magnetic resonance imaging technique that does not require exogenous contrast. It is a refinement of the quantitative BOLD methodology that provides a simplified approach to mapping and quantifying baseline brain oxygenation related parameters (reversible transverse relaxation rate (R2'), deoxygenated blood volume (DBV) and deoxyhaemoglobin concentration ([dHb])) in a clinically relevant manner. Streamlined-qBOLD was applied to an exploratory cohort of acute stroke patients in a serial imaging study. Detailed voxel-level analysis was used to quantify the metabolic profile of ischaemic tissue on presentation and investigate these metrics in relation to tissue outcome. Individual patient examples illustrate the appropriate interpretation of R2', DBV and [dHb] in acute stroke and demonstrate the ability of this method to deliver regional information related to oxygen metabolism in the ischaemic tissue. Regional analysis confirms that R2', DBV and [dHb] vary between regions of ischaemia with different tissue outcomes.

neuroscience↗

Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain

Clinical pain is difficult to study using standard Blood Oxygenation Level Dependent (BOLD) magnetic resonance imaging because it is often ongoing and, if evoked, it is associated with stimulus-correlated motion. Arterial spin labelling (ASL) offers an attractive alternative. This study used arm repositioning to evoke clinically-relevant musculoskeletal pain in patients with shoulder impingement syndrome. Fifty-five patients were scanned using a multi post-labelling delay pseudo-continuous ASL (pCASL) sequence, first with both arms along the body and then with the affected arm raised into a painful position. Twenty healthy volunteers were scanned as a control group. Arm repositioning resulted in increased perfusion in brain regions involved in sensory processing and movement integration, such as the contralateral primary motor and primary somatosensory cortex, mid- and posterior cingulate cortex, and, bilaterally, in the insular cortex/operculum, putamen, thalamus, midbrain and cerebellum. Perfusion in the thalamus, midbrain and cerebellum was larger in the patient group. Results of a post hoc analysis suggested that the observed perfusion changes were related to pain rather than arm repositioning. This study showed that ASL can be useful in research on clinical ongoing musculoskeletal pain but the technique is not sensitive enough to detect small differences in perfusion.

neuroscience↗