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Biology subjects

Ohara, K.

Publications and source records attributed to Ohara, K..

2 recordsLinked to original sources

Prolonged exposure to hypergravity increases biomass and alters biomass allocation in Arabidopsis thaliana (L.) Heynh. with no apparent impact on element content in the shoot system

Previous studies have already shown that plants can complete their life cycle under microgravity. However, the effects of long-term exposure to altered gravity conditions, including microgravity, on most of the biological processes of a plants life cycle remain largely unexplored. Given the limited opportunities for space experiments, it is crucial to conduct ground-based experiments, such as hypergravity experiments. To investigate the longer-term effects of hypergravity, we have developed and utilized a custom-built hypergravity cultivation system using a centrifuge equipped with lighting, enabling the continuous growth of seed plants under hypergravity conditions. In this study, we examined the effects of 10 g hypergravity on the biomass of the shoot system (stems and rosette leaves) and the root system of vascular plants for the first time, covering the entire cultivation period from germination to 40 days. Our results showed that the dry mass of the stem per unit length was significantly higher under 10 g compared to the 1 g control, indicating a typical gravity resistance response of the stem. Moreover, the total dry mass of the stems, rosette leaves, and roots was higher under 10 g hypergravity compared to the 1 g control, suggesting an increase in biomass at the individual plant level. We also observed that the leaf mass per area of the rosette leaf was higher under hypergravity compared to the 1 g control, indicating enhanced photosynthesis rates in Arabidopsis and resulting in increased biomass of individual plants. In terms of biomass allocation, both root-shoot ratio and root mass fraction were significantly higher under hypergravity conditions compared to the 1 g control. Furthermore, we measured the content of mineral elements (Ca, Co, Cu, Fe, K, Mg, Mn, Mo, P, Zn) in the roots and rosette leaves using inductively coupled plasma optical emission spectrometry. Despite the increase in dry mass of the root system, we found no significant differences in the content of any of the ions analyzed between 10 g and 1 g conditions, indicating that mineral nutrient uptake homeostasis is maintained even under hypergravity conditions.

plant biology↗

The evolution of genomic, transcriptomic, and single-cell protein markers of metastatic upper tract urothelial carcinoma

The molecular characteristics of metastatic upper tract urothelial carcinoma (UTUC) are unknown. The genomic and transcriptomic differences between primary and metastatic UTUC is not well described either. We combined whole-exome sequencing, RNA-sequencing, and Imaging Mass Cytometry (IMC) of 44 tumor samples from 28 patients with high-grade primary and metastatic UTUC. IMC enables spatially resolved single-cell analyses to examine the evolution of cancer cell, immune cell, and stromal cell markers using mass cytometry with lanthanide metal-conjugated antibodies. We discovered that actionable genomic alterations are frequently discordant between primary and metastatic UTUC tumors in the same patient. In contrast, molecular subtype membership and immune depletion signature were stable across primary and matched metastatic UTUC. Molecular and immune subtypes were consistent between bulk RNA-sequencing and mass cytometry of protein markers from 340,798 single-cells. Molecular subtyping at the single cell level was highly conserved between primary and metastatic UTUC tumors within the same patient.

cancer biology↗