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Biology subjects

Obiol, J. F.

Publications and source records attributed to Obiol, J. F..

3 recordsLinked to original sources

Early-life stress as a potential resilience factor in king penguins

Climate change-driven environmental variability can cause species to shift their phenology, leading to an increase in phenological mismatches. Whether the fitness cost of such mismatches can be mitigated by plasticity remains poorly understood, especially in the context of wild populations. In this study, we quantified responses to phenological mismatch using capture-mark-recapture, morphological, and transcriptomic data from king penguins hatching during and after the seasonal peak of food availability (i.e., born early and late in the breeding season, respectively). Late-born chicks showed reduced survival to fledging and fledged smaller and in slightly poorer body condition than chicks born during the seasonal peak in food availability. Yet post-fledging return rates did not differ between late- and early-born chicks, suggesting that early-life stress was effectively mitigated among individuals that survived to fledging, with no detectable carryover effects in the first years post-fledging. Genes involved in oxidative stress response, homeostasis, and nutrient-sensing were differentially expressed between early- and late-born chicks, consistent with stress mitigation and homeostasis maintenance at the expense of growth in late-born chicks. A co-expression gene cluster whose primary expression pattern was associated with hatching phenology also contained central genes involved in stress mitigation. Together, our findings highlight molecular mechanisms that buffer the fitness costs of phenological mismatch, which may allow species to tolerate mismatch to some extent. Despite higher winter mortality of individuals born in mismatch, the plastic response observed in survivors hints towards molecular adaptations that could allow species resilience under increasing climate-driven environmental unpredictability.

genomics↗

Repeated signatures of balancing selection in small and large populations of guppies (Poecilia reticulata)

Balancing selection is a powerful evolutionary force that maintains adaptive genetic and phenotypic diversity. Although methods to detect the footprints of balancing selection in genomic data have advanced, we still lack a clear understanding of how repeatable these signatures appear in wild populations, and how this repeatability is shaped by demographic history and existing genetic variation. The Trinidadian guppy (Poecilia reticulata) provides an ideal model to test the repeatability of balancing selection in the wild as there is strong evidence that negative frequency-dependent selection (NFDS) maintains colour polymorphism. Analysing whole-genome sequencing data from 11 guppy populations (n = 195) with contrasting demographic contexts, we apply scans of balancing selection to explore which genomic regions show evidence of repeatability. We find that populations with small Ne show less genetic repeatability but still exhibit population-specific regions of elevated diversity, implicating independent balancing selection or other evolutionary mechanisms. Despite this, we identify 23 regions with repeated signatures of balancing selection, including a region on LG22 containing genes involved in colour, vision, mate choice, and social behaviour. Investigating the repeatability of balancing selection in small and large populations improves our knowledge of how demographic factors interact with selective processes to shape natural variation.

evolutionary biology↗

A chromosome-level genome of the King penguin (Aptenodytes patagonicus): an emerging model-in-the-wild for studying evolution

The King penguin (Aptenodytes patagonicus) is an iconic species of the Southern Ocean and is currently being developed as a model-in-the-wild for understanding evolution. We present a high-quality, haplotype-resolved 1.35 Gb chromosome-level genome of an adult female King penguin - Pen/Se-guin - from the Crozet Archipelago, assembled using PacBio HiFi long-read sequencing and Hi-C proximity data. 94.93% of the assembly is assigned to 34 chromosomes (32 autosomes, plus the Z and W chromosomes), with a BUSCO completeness of 97.2%, a k-mer completeness of 99.7%, and a quality value (QV) of 63.8. We also assembled a circularised mitogenome (20,520 bp), which includes the avian tandem duplication (TD). Annotation of repetitive sequences revealed that 16.3% of the genome comprises repetitive elements, with LINEs being the most abundant transposable element class (5.6%). Gene prediction using an extensive multi-tissue RNA-seq dataset resulted in 18,081 predicted protein-coding genes, of which 17,081 were functionally annotated, with a BUSCO completeness of 98.4% and an OMArk completeness of 97.3%. The presented assembly substantially improves the quality of a previous draft genome, showing a 28-fold increase in assembly contiguity and a significantly improved genome annotation, exceeding the standards of the Earth BioGenome Project (EBP) and Vertebrate Genomes Project (VGP). This high-quality genome will enable ongoing and future studies harnessing the King penguin as a model-in-the-wild to test hypotheses on the genotype-to-fitness link, ageing, life-history trait evolution, and adaptation.

genomics↗