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Biology subjects

Nyeng, P.

Publications and source records attributed to Nyeng, P..

2 recordsLinked to original sources

Topological Analysis of Multi-Network Threading in the Pancreas

The pancreas is a complex inner organ that develops through the concurrent formation of multiple interacting biological networks, but the geometric principles governing their spatial organization remain poorly understood. Here, we study pancreatic development by analysing loop structures in ductal, neuronal, and vascular networks using tools from topological data analysis. In particular, we employ the application of chromatic persistence, which is designed to detect topological interactions between distinct subsets of a structure; this is used to quantify how loops from different networks become spatially entangled. Our analysis reveals distinct developmental timelines for loop formation, progressive entanglement between ducts and vasculature, and spatial concentration of threading toward the organ interior, providing a geometric characterisation of coordinated network development in the pancreas.

developmental biology↗

Real time quantification of apical polarity protein reveals novel dynamic processes in luminal network establishment and remodeling in the pancreas

During embryogenesis dynamic changes in tissue architecture transform primitive anlages to functional organs. Here we document in real time how pancreatic lumens are derived and transformed using a new apical-polarity mouse reporter. Our 4D imaging data reveals dynamic remodeling of apical proteins and lumens to primarily drive each stage of pancreatic duct development. Furthermore, we pinpoint two unique transitions during lumenogenesis. Contrary to current "de novo" models of polarity acquisition, we show that expansion and rearrangement of the pre-existing central primary lumen drives early network growth. We also document how the endocrine promoting niche - a "plexus" of interconnected ducts - is resolved. We show that an arborized network forms by gradual closing of ductal loops, rather than via pruning. These novel tissue dynamics provide a new framework within which cell and molecular signaling can be investigated to better understand the interplay between organ architecture and cell fate.

developmental biology↗