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Nunes Palmeira, R.

Publications and source records attributed to Nunes Palmeira, R..

2 recordsLinked to original sources

First growth, then information: the path to genetic heredity in protocells

Most theoretical work on the origin of heredity has focused on how genetic information can be maintained without mutational degradation in the absence of error-proofing systems. A simple and parsimonious solution assumes the first gene sequences evolved inside dividing protocells, which enables selection for functional sets. But these models of information maintenance do not consider how protocells acquired their genetic information in the first place. Clues to this transition are suggested by patterns in the genetic code, which indicate a strong link to autotrophic metabolism, with early translation based on direct physical interactions between amino acids and short RNA polymers, grounded in their hydrophobicity. Here, we develop a mathematical model to investigate how random RNA polymers inside autotrophically growing protocells could evolve better coding sequences for discrete functions. The model tracks a population of protocells that evolve towards two essential functions: CO2 fixation (which drives monomer synthesis and cell growth) and copying (which amplifies replication and translation of sequences inside protocells). The model shows that distinct coding sequences can emerge from random RNA sequences driving increased protocell division. The analysis reveals an important restriction: growth-supporting functions such as CO2 fixation must be more easily attained than informational processes such as RNA copying and translation. This uncovers a fundamental constraint on the emergence of genetic heredity: growth precedes information at the origin of life.

evolutionary biology↗

The limits of metabolic heredity in protocells

The universal core of metabolism could have emerged from thermodynamically favoured prebiotic pathways at the origin of life. Starting with H2 and CO2, the synthesis of amino acids and mixed fatty acids, which self-assemble into protocells, is favoured under warm anoxic conditions. Here we address whether it is possible for protocells to evolve greater metabolic complexity, through positive feedbacks involving nucleotide catalysis. Using mathematical simulations to model metabolic heredity in protocells, based on branch points in proto-metabolic flux, we show that nucleotide catalysis can indeed promote protocell growth. This outcome only occurs when nucleotides directly catalyse CO2 fixation. Strong nucleotide catalysis of other pathways (e.g. fatty acids, amino acids) generally unbalances metabolism and slows down protocell growth, and when there is competition between catalytic functions cell growth collapses. Autocatalysis of nucleotide synthesis can promote growth but only if nucleotides also catalyse CO2 fixation; autocatalysis alone leads to the accumulation of nucleotides at the expense of CO2 fixation and protocell growth rate. Our findings offer a new framework for the emergence of greater metabolic complexity, in which nucleotides catalyse broad-spectrum processes such as CO2 fixation, hydrogenation and phosphorylation important to the emergence of genetic heredity at the origin of life.

evolutionary biology↗