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Nueda, M. J.

Publications and source records attributed to Nueda, M. J..

2 recordsLinked to original sources

Chitosan induces plant hormones and defences in tomato root exudates

In this work, we use electrophysiological and metabolomic tools to determine the role of chitosan as plant defence elicitor in soil for preventing or manage root pests and diseases sustainably. Root exudates include a wide variety of molecules that plants and root microbiota use to communicate in the rhizosphere. Tomato plants were treated with chitosan. Root exudates from plants were analysed at 3, 10, 20 and 30 days after planting (dap). We found, using High Performance Liquid Chromatography (HPLC) and Excitation Emission Matrix (EEM) fluorescence, that chitosan induces plant hormones, lipid signalling and defence compounds in tomato root exudates, including phenolics. High doses of chitosan induce membrane depolarization and affect membrane integrity. 1H-NMR showed the dynamic of exudation, detecting the largest number of signals in 20 dap root exudates. Root exudates from plants irrigated with chitosan inhibit ca. 2-fold growth kinetics of the tomato root parasitic fungus Fusarium oxysporum f. sp. radicis-lycopersici. and reduced ca. 1.5-fold egg hatching of the root-knot nematode Meloidogyne javanica. One-sentence summaryChitosan depolarizes plasma membrane of root cells, causing the secretion of hormones, lipid signalling and plant defence compounds, including phenolics. These root exudates inhibit soil-borne pathogens.

plant biology↗

Identification and visualization of differential isoform expression in RNA-seq time series

As sequencing technologies improve their capacity to detect distinct transcripts of the same gene and to address complex experimental designs such as longitudinal studies, there is a need to develop statistical methods for the analysis of isoform expression changes in time series data. Iso-maSigPro is a new functionality of the R package maSigPro for transcriptomics time series data analysis. Iso-maSigPro identifies genes with a differential isoform usage across time. The package also includes new clustering and visualization functions that allow grouping of genes with similar expression patterns at the isoform level, as well as those genes with a shift in major expressed isoform. The package is freely available under the LGPL license from the Bioconductor web site (http://bioconductor.org).

bioinformatics↗