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Biology subjects

North, A.

Publications and source records attributed to North, A..

7 recordsLinked to original sources

Spatial turnover amplifies with trophic level in hyperdiverse food webs

One of the most intuitive ideas in ecology is that diversity at lower trophic levels in food webs provides niches to support diversity at higher trophic levels. This accumulation of diversity can be limited by survival of species in the landscape, but revealing these limits has been challenging. We analyze spatial turnover in a hyperdiverse parasitoid-caterpillar-plant food web across 75,000 km2 of continuous lowland rainforest in Papua New Guinea. Species turnover across sites is higher in parasitoids than in their caterpillar hosts. Furthermore, turnover of interactions is also higher in parasitoid-caterpillar than caterpillar-plant networks. Spatial turnover thus amplifies upwards across trophic levels, forcing parasitoids to live closer to spatial persistence limits. Consequently, progressing rainforest fragmentation can especially endanger parasitoids.

ecology↗

Microbiome Dynamics During Translocation of the Critically-Endangered Frog Craugastor ranoides

O_LIAmphibian populations are declining and species going extinct due to habitat loss, climate change and emerging infectious disease, prompting the increasing use of translocations as a conservation tool. C_LIO_LISkin-associated microbial communities play a key role in amphibian health, particularly in protecting hosts from pathogenic infection. However, to date we know relatively little about the impact of translocation on the dynamics of skin-associated microbes, or the consequences of translocation-mediated disturbance of the microbiome for amphibian health. C_LIO_LIWe investigated the skin microbiome of the critically endangered frog Craugastor ranoides, now restricted to a fraction of its historical range in Costa Rica. We first conducted a multi-population survey to characterise among-population variation in skin bacterial communities. We then translocated individuals to a new site, using radio tracking to monitor them over time and assess individual-level changes in body mass, microbiome composition, and predicted microbial function. C_LIO_LIWe found limited among-population variation in skin microbiome composition across three different populations of C. ranoides. Response of the microbiome to translocation was highly individual-specific; some frogs demonstrated relatively stable community richness and composition, whilst others exhibited marked turnover in bacterial membership and predicted function. Body mass showed similar dynamics, but several of the recaptured frogs had gained mass after several days in the translocation site. C_LIO_LISynthesis and Applications: Our findings highlight the importance of considering microbiome dynamics in threatened species translocations to optimize individual health. This includes considering whether individuals should be prioritised for translocation based on their initial microbiome composition, and understanding how shifts in microbiome post-translocation may alter overall success of translocation efforts. These insights extend beyond amphibians, offering a broader framework for integrating long-term monitoring of host microbiomes and health into conservation efforts. C_LI

ecology↗

A comparison of super-resolution microscopy techniques for imaging tightly packed microcolonies of an obligate intracellular bacterium

Conventional optical microscopy imaging of obligate intracellular bacteria is hampered by the small size of bacterial cells, tight clustering exhibited by some bacterial species and challenges relating to labelling such as background from host cells, a lack of validated reagents, and a lack of tools for genetic manipulation. In this study we imaged intracellular bacteria from the species Orientia tsutsugamushi (Ot) using five different fluorescence microscopy techniques: standard confocal, Airyscan confocal, instant Structured Illumination Microscopy (iSIM), three-dimensional Structured Illumination Microscopy (3D-SIM) and Stimulated Emission Depletion Microscopy (STED). We compared the ability of each to resolve bacterial cells in intracellular clumps in the lateral (xy) axis, using full width half maximum (FWHM) measurements of a labelled outer membrane protein (ScaA) and the ability to detect small, outer membrane vesicles external to the cells. We next compared the ability of each technique to sufficiently resolve bacteria in the axial (z) direction and found 3D-STED to be the most successful method for this. We then combined this approach with a custom 3D cell segmentation and analysis pipeline using the open-source, deep learning software, Cellpose to segment the cells and subsequently the commercial software Imaris to analyze their 3D shape and size. Using this combination, we demonstrated differences in bacterial shape, but not their size, when grown in different mammalian cell lines. Overall, we compare the advantages and disadvantages of different super-resolution microscopy techniques for imaging this cytoplasmic obligate intracellular bacterium based on the specific research question being addressed.

microbiology↗

The potential of gene drive releases in malaria vector species to reduce the malaria burden in different African environments

Gene drive technologies are a promising means of malaria control with the potential to cause widespread and sustained reductions in transmission. In real environments, however, gene drive impacts will depend on local ecological and epidemiological factors. We develop a data-driven model to investigate the impacts of a gene drive that causes vector population suppression. We apply the model to sixteen [~]12,000km2 areas of west Africa that span variation in vector ecology and malaria prevalence. We simulate gene drive releases targeting different vector species combinations, and estimate reductions in vector abundance, malaria prevalence and clinical cases in children. Average reductions in vector abundance ranged from 77.3%-99.1% across areas when the gene drive releases targeted all major vector species (Anopheles gambiae, An. coluzzii, An. arabiensis, and An. funestus). Impacts on malaria depended strongly on which vector species were targeted. Consistently strong impacts required releases targeting all vector species, which reduced prevalence by over 90% in all areas. When the major vector species An. gambiae and An. coluzzii were targeted, average reductions in prevalence ranged from no reduction to 72% across areas, and reductions in cumulative clinical cases ranged from zero to 57%. When other new interventions including RTS,S vaccination and pyrethroid-PBO bednets were in place, at least 60% more clinical cases were averted when gene drives were added, demonstrating the benefits of integrated interventions. Our results give new insights into the factors determining the impacts of gene drives on malaria across different African settings.

genetics↗

A Meta-analysis of Longevity Estimates of Mosquito Vectors of Disease

Mosquitoes are responsible for more human deaths than any other animal, yet we still know relatively little about their ecology. Mosquito lifespan is a key determinant of the force of transmission for the diseases they vector, but the field experiments and dissection methods used to determine this quantity produce estimates with high uncertainty. In this paper, we use Bayesian hierarchical models to analyse a previously published database of 232 mark-release-recapture (MRR) experiments and two databases of different types of mosquito dissection experiments. One, compiled by us, consisted of 131 detailed estimates of the number of egg-laying (gonotrophic) cycles, the other, a recently published dataset of 1490 studies of parity (whether a mosquito has laid eggs or not) in anopheline malaria vectors. We analysed all studies with the same methodology and used Bayesian hierarchical statistics to obtain estimate at the species and genus level. For the major African malaria vector Anopheles gambiae s.l., we estimate lifespans ranging from 4.4 days (from MRR analysis) to 10.3 days (from parity analysis). For the predominantly East-African vector An. funestus s.l., our lifespan estimates range from 4.2 days (MRR) to 7.1 days (dichotomous parity analysis). We estimate lifespans ranging from 4.7 days (physiological age analysis) to 6.2 days (MRR) for Aedes aegypti, and a lifespan of 11.6 days for Ae. Albopictus (only present in MRR data) - the predominant vectors of key arboviruses. Additionally, we estimate that female mosquitoes outlive males by 1.2 days on average (mean estimate; 25%-75% CI: 0.3-1.6 days). By fitting a range of survival models to the data, we found relatively little evidence for senescence in the field. Our analyses, supplemented by power analyses, indicate the considerable uncertainty that remains about mosquito lifespan in the wild. We conclude further progress will require larger and longer experiments or the development of novel new methodologies. Author summaryMosquitoes transmit some of the most important diseases afflicting humans, with malaria alone killing between 390,000 and 460,000 people in 2019, chiefly children in low-income countries. The force of transmission of these diseases depends critically on the duration of mosquito lifespans, and some of the most successful disease control interventions, including insecticide-treated bednets, work because they reduce mosquito longevity. In this study, we conduct meta-analyses of two important classes of field experiments used to estimate wild mosquito lifespan: mark-release-recapture studies, where mosquitoes are marked with dye then released with the number of marked mosquitoes caught monitored over time; and experiments involving dissection of wild-caught females, whose reproductive anatomy is used as a biological clock to determine physiological age. In all analyses, we estimate that most mosquito species live less than 10 days on average, which suggests that relatively few mosquitoes live sufficiently long to transmit disease. The estimates obtained across the two field experiment types were largely discordant and indicated conflicting sources of heterogeneity in lifespan, likely due to the weak power of small-scale experiments. Finally, by fitting a range of survival models to the data, we conclude that, for most species, mosquitoes do not experience strong age-related increases in mortality. We critique the quality of the existing evidence base about mosquito lifespans in the field and suggest how it may be improved. Author contributionsBL, AN and HCJG designed this study. BL was responsible for data curation, developing the statistical methodology and conducting the investigation. All authors were involved in drafting the original manuscript and revising it.

ecology↗

Engineered Enzymes that Retain and Regenerate their Cofactors Enable Continuous-Flow Biocatalysis

Introduction Introduction Results Conclusions Author Contributions Competing Interests Statement General DNA manipulation G3PDEc NoxCa GlpKTk AceKMs GlpKTk-AceKMs G3PDEc-NOXCa GlpKTk-AceKMsE2Aa G3PDEc-NOXCa-Est2Aa FruASc-Est2Aa Engineered Fusion Protein... Expression of individual enzymes... Expression of GlpKTk-AceKMs-E2Aa Expression and purification of... Expression and purification of... Protein Expression and... Synthesis of N6-2AE-ADP ...

synthetic biology↗

The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito

Gene drives have enormous potential for the control of insect populations of medical and agricultural relevance. By preferentially biasing their own inheritance gene drives can rapidly introduce genetic traits even if these confer a negative fitness on the population.\n\nWe have recently developed gene drives based on a CRISPR nuclease construct that is designed to disrupt key genes essential for female fertility in the malaria mosquito. The construct copies itself and the associated genetic disruption from one homologous chromosome to another during gamete formation, in a process called homing that ensures the majority of offspring inherit the drive. Such drives have the potential to cause long-lasting, sustainable population suppression though they are also expected to impose a large selection pressure for resistance in the mosquito. One of these population suppression gene drives showed rapid invasion of a caged population over 4 generations, establishing proof of principle for this technology. In order to assess the potential for the emergence of resistance to the gene drive in this population we allowed it to run for 25 generations and monitored the frequency of the gene drive over time. Following the initial increase of the gene drive we noticed a gradual decrease in its frequency that was accompanied emergence of small, nuclease-induced mutations at the target gene that are resistant to further cleavage and restore its functionality. Such mutations show rates of increase consistent with positive selection in the face of the gene drive. Our findings represent the first documented example of selection for resistance to a synthetic gene drive and lead to important design recommendations and considerations in order to mitigate for resistance for future gene drive applications.

evolutionary biology↗