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Nicollin, E.

Publications and source records attributed to Nicollin, E..

2 recordsLinked to original sources

Generation mechanisms and species-specific properties of parkinsonian beta oscillations in the basal ganglia

The basal ganglia (BG), thalamus and cortex form the BG-thalamo-cortical (BGTC) network, which is essential for voluntary movement and centrally involved in Parkinson's disease (PD). In both patients and animal models, BG neuronal activity exhibits exaggerated oscillatory synchronization in the beta frequencies (13-30 Hz). Theoretical studies have proposed multiple network mechanisms for the generation of these abnormal beta oscillations. However, key properties, such as frequency and power distribution across BG nuclei, vary substantially among patients and between animal models (rodents vs. non-human primates). This variability complicates direct comparisons between theoretical models and experimental data, and questions whether distinct neuronal mechanisms may underlie beta oscillations across species. In an experimentally constrained BGTC network model with species-specific parameters (synaptic, neuronal, and network properties), we evaluate the features of abnormal beta oscillatory activity generated by different mechanisms. The network's negative feedback loops serve as potential sources of spontaneous oscillations. Using rodent- or primate-constrained models, we compare the spectral properties of oscillatory activity across network populations for each loop and derive the expected phase relationships between populations to align predictions with existing rodent data and propose testable hypotheses for primates. We also demonstrate how oscillation frequency can be modulated when multiple generation mechanisms interact as coupled oscillators in the full network. Our results, combined with observed cross-species beta oscillations characteristics, suggest that abnormal beta oscillations likely arise from distinct mechanisms in rodents and primates.

neuroscience↗

The Hok bacterial toxin: diversity, toxicity, distribution and genomic localization

The hok/Sok type I toxin-antitoxin system is encoded in chromosomes and plasmids of multiple Gram-negative bacteria. Current knowledge about hok/Sok regulation, toxicity and function originates mostly from the system present in the R1 plasmid, alongside a handful of homologs. The recent expansion of bacterial genome sequences calls for an updated analysis of hok/Sok diversity and distribution. Here, we used protein and DNA sequences as well as RNA structure to search for Hok homologs. Hok was detected in almost 80% of the available Enterobacteriaceae genomes and, more rarely, in three other bacterial families. Similarity, clustering analysis of thousands of Hok homologs unveiled high Hok sequence variability and uncovered clusters of novel homologs. Experimental validation of representative sequences revealed their toxicity, regardless of their localization. After scanning dedicated databases, we observed an enrichment of the hok sequences in prophages and large conjugative plasmids. Finally, we identified horizontal gene transfer events across genera, predominantly mediated by plasmids. Our findings yield a comprehensive and curated catalog of annotated sequences, detailing genomic localization, toxic activity and distribution across diverse bacterial genomes.

bioinformatics↗