Biology subjects

Nico Stuurman

Publications and source records attributed to Nico Stuurman.

2 recordsLinked to original sources

bioRxiv2016

A data acquisition and analysis pipeline for scanning angle interference microscopy

We describe open source software and hardware tools for calibrating, acquiring, and analyzing images for scanning angle interference microscopy (SAIM) analysis. These tools make it possible for any user with a TIRF microscope equipped with a motorized illumination unit to generate reconstructed images with nanometer precision in the axial (z) direction and diffraction-limited resolution in the lateral (xy) plane.

Biophysics↗

bioRxiv2016

Micro-Magellan: A flexible, open source acquisition software for high throughput biological light microscopy

We demonstrate the capabilities of Magellan: a flexible, open source microscopy software for reproducible high throughput imaging of biological samples across heterogeneous scales of space and time. Magellan provides a simple user interface for exploration and automated imaging of non-cuboidal regions. By utilizing the hardware abstraction layer of Magellan, Magellan provides a powerful and extensible platform for imaging heterogeneous biological samples on a wide range of existing microscopes.

Systems Biology↗