Biology subjects

Nguyen, N. T. K.

Publications and source records attributed to Nguyen, N. T. K..

6 recordsLinked to original sources

bioRxiv2026

In vivo effects of inducible transgene expression of the age-associated glycogenes St6gal1 and Man1a on epidermal homeostasis

Glycosylation of cell-surface proteins plays several essential roles in cell-matrix interactions and receptor signaling, thereby contributing to tissue homeostasis and aging. In aged mouse skin, epidermal stem cells exhibit increased levels of a2,6-sialylated complex-type N-glycans alongside upregulation of glycogenes such as St6gal1 and Man1a; however, the functional importance of these glycosylation changes in vivo remains largely unknown. Here, we generated doxycycline-inducible transgenic mice expressing the age-related glycogenes St6gal1 and Man1a, either individually or in combination, using ubiquitous and epidermis-specific drivers. Lectin-based analyses with SNA and rHeltuba demonstrated corresponding alterations in glycosylation patterns in these mice. Transgenic Man1a induction reduced epidermal proliferation and epidermal thickness. In contrast, St6gal1 induction caused splenomegaly and elevated expression of inflammatory signature genes in the skin but did not measurably alter epidermal proliferation or morphology. Double transgenic mice exhibited a hybrid phenotype combining inflammatory and proliferative impairments, although comparison of ubiquitous and epidermis-specific induction indicated that the observed skin phenotypes depended on the epidermal expression of the transgenes. An SNA lectin-based pull-down assay followed by mass spectrometry identified candidate a2,6-sialylated proteins, including integrin family members, junctional proteins, and surface receptors, following induction of St6gal1 and Man1a. Together, these findings suggest that increased expression of the age-associated glycogenes St6gal1 and Man1a perturbs distinct aspects of epidermal homeostasis in vivo and identify candidate glycoproteins that may mediate these effects.

cell biology↗

bioRxiv2026

Disruption of cAMP Signalling and RNA Regulation Confers Cefiderocol Resistance in Acinetobacter baumannii

Cefiderocol is a siderophore-conjugated cephalosporin used to treat severe multidrug-resistant Gram-negative infections. Its recent prioritisation for US national preparedness underscores its clinical importance, yet resistance can emerge despite apparent in vitro susceptibility. Here, we identify two regulatory routes to cefiderocol resistance in carbapenem-resistant Acinetobacter baumannii (CRAB): mutation of the cAMP-producing adenylate cyclase CavA and truncation of the glycine-rich RNA-binding domain of the post-transcriptional regulator Hfq. These variants occurred in contemporary clinical isolates, conferred resistance in a murine CRAB lung-infection model and imposed minimal fitness costs. In Escherichia coli, deletion of the CavA orthologue cyaA increased competitive fitness during sub-inhibitory cefiderocol exposure. Hfq-CLASH and integrated omics revealed Hfq-dependent regulation of Fur-associated iron homeostasis in A. baumannii. Under iron limitation, truncated-Hfq induced a defence-primed state that attenuated siderophore uptake and reduced cefiderocol activity. These findings identify bacterial regulatory state and iron availability as determinants of cefiderocol susceptibility, with implications for resistance surveillance and susceptibility testing.

microbiology↗

bioRxiv2026

The Il1r2-CreERT2 knock-in mouse enables inducible labeling of slow-cycling epidermal basal cells and genetic ablation of the IL-1 decoy receptor

The interfollicular epidermis is maintained by spatially organized basal cell populations with distinct molecular signatures and division kinetics; however, the markers that define these populations remain poorly defined. In this study, we identified Il1r2, which encodes the IL-1 decoy receptor IL-1R2, as a marker of the slow-cycling basal population in the epidermis. Single-cell RNA-seq analysis of epidermal and hair follicle basal populations in the murine tail skin revealed that Il1r2 is preferentially expressed in the slow-cycling epidermal basal population, and immunofluorescence staining confirmed its protein localization in tissues. To enable fate mapping of this population, we generated an Il1r2-CreERT2 knock-in mouse line using a CRISPR-Cas9-based PITCh method. Tamoxifen induction in Il1r2-CreERT2/Rosa-tdTomato mice exhibited selective labeling of basal cells localized to the slow-cycling interscale region of the tail epidermis. Because the CreERT2 cassette was inserted into the Il1r2 coding sequence, homozygous Il1r2-CreERT2 knock-in mice can also serve as an Il1r2 knockout model through targeted gene ablation. Thus, the Il1r2-CreERT2 mouse line provides a dual genetic tool for lineage tracing of the slow-cycling epidermal basal population and for functional modulation of IL-1 signaling in vivo.

developmental biology↗

bioRxiv2026

RUNX1-ETO expression in epidermal keratinocytes induces progressive skin inflammation in vivo

Basal keratinocytes in the skin are essential for epidermal homeostasis and repair; however, how intrinsic alterations in these cells contribute to inflammatory skin pathology remains poorly understood. In this study, we employed a tamoxifen-inducible mouse model to express the human RUNX1-ETO fusion gene, a well-established oncogenic driver of acute myeloid leukemia, in epidermal basal keratinocytes. RUNX1-ETO induction in keratinocytes resulted in progressive skin inflammation in vivo, accompanied by splenomegaly, epidermal hyperplasia, increased cytokine production, and alterations in epidermal stem cell composition. Inflammatory lesions were prominent in the tail, ear, and plantar epidermis, whereas hair-bearing dorsal skin remained largely unaffected. RNA-seq analysis of FACS-isolated RUNX1-ETO+ basal keratinocytes revealed global changes in gene expression, characterized by the suppression of epidermal homeostatic and metabolic programs and the activation of inflammatory signaling pathways. In particular, RUNX1-ETO expression was associated with increased TNF/NF-{kappa}B and IL-6-STAT signaling, as well as interferon-associated inflammatory pathways, together with the induction of neutrophil-attracting chemokines and epithelial inflammatory mediators. Together, these findings indicate that RUNX1-ETO-mediated transcriptional dysregulation in basal keratinocytes promotes a pro-inflammatory cellular state that drives progressive skin inflammation.

cell biology↗

bioRxiv2026

Inflammatory IL-1 signaling remodels epidermal stem cell compartments by suppressing Wnt activity

The skin epidermis is maintained by spatially organized stem cell populations with distinct cellular dynamics; however, how inflammation affects this heterogeneity remains largely unknown. Here, we demonstrate that acute skin inflammation alters epidermal stem cell compartments through IL-1-mediated suppression of canonical Wnt signaling. Lineage tracing in inflamed mouse skin revealed that slow-cycling Dlx1+ epidermal stem cell clones persist, whereas fast-cycling Slc1a3+ clones decline through enhanced differentiation and lineage conversion, driving the reorganization of epidermal stem cell compartments. IL-1 signaling is both necessary and sufficient for this change: administration of IL-1/{beta} recapitulates these effects, while transgenic induction of the IL-1 decoy receptor preserves the balance of stem cell populations. IL-1 suppresses canonical Wnt activity in both the mouse epidermis and human keratinocytes, and Wnt ligand administration restores the fast-cycling compartment in vivo. Together, these results identify a reversible IL-1-Wnt axis that governs inflammation-induced stem cell plasticity and spatial tissue remodeling. HighlightO_LIInflammation induces reversible remodeling of epidermal stem cell compartments C_LIO_LIDistinct epidermal stem cell populations exhibit differential responses to inflammation C_LIO_LIIL-1 suppresses canonical Wnt signaling, thereby biasing fast-cycling stem cell behavior C_LIO_LIReactivation of Wnt signaling restores stem cell population balance under inflammatory conditions C_LI O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=132 SRC="FIGDIR/small/704488v1_ufig1.gif" ALT="Figure 1"> View larger version (50K): org.highwire.dtl.DTLVardef@e430e5org.highwire.dtl.DTLVardef@1464550org.highwire.dtl.DTLVardef@70ba1borg.highwire.dtl.DTLVardef@ca502c_HPS_FORMAT_FIGEXP M_FIG C_FIG

developmental biology↗

bioRxiv2024

Programmable Editing of Primary MicroRNA Switches Stem Cell Differentiation and Improves Tissue Regeneration

Programmable RNA editing is harnessed for modifying mRNA. Besides mRNA, miRNA also regulates numerous biological activities, but current RNA editors have yet to be exploited for miRNA manipulation. To engineer primary miRNA (pri-miRNA), the miRNA precursor, we present a customizable editor REPRESS (RNA Editing of Pri-miRNA for Efficient Suppression of miRNA) and characterize critical parameters. The optimized REPRESS is distinct from other mRNA editing tools in design rationale, hence enabling editing of pri-miRNAs that are not editable by other RNA editing systems. We edited various pri-miRNAs in different cells including adipose-derived stem cells (ASCs), hence attenuating mature miRNA levels without disturbing host gene expression. We further developed an improved REPRESS (iREPRESS) that enhances and prolongs pri-miR-21 editing for at least 10 days, with minimal perturbation of transcriptome and miRNAome. iREPRESS reprograms ASCs differentiation, promotes in vitro cartilage formation and augments calvarial bone regeneration in rats, thus implicating its potentials for engineering miRNA for many applications such as stem cell engineering and tissue regeneration.

bioengineering↗