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Biology subjects

Natsume, K.

Publications and source records attributed to Natsume, K..

2 recordsLinked to original sources

Diversity of vector-dispersed microbes peaks at a landscape-defined intermediate rate of dispersal

Dispersal rate has long been considered a primary determinant of species diversity in ecological communities. However, this knowledge is mostly built on studies of organisms that disperse actively by themselves or passively via physical forces. For organisms that disperse passively via other organisms, the landscape matrix that affects their vectors should indirectly shape the diversity of the vectored, but this relationship remains poorly understood. We investigated landscape-dispersal-diversity relationships in nectar-inhabiting bacteria that disperse via flower-visiting insects. Field observation and experiments revealed that bacterial diversity and abundance peaked at an intermediate frequency of insect visits, which was in turn determined by the surrounding landscape characteristics observed at the 200-m radius scale. Based on this finding, we discuss the possibility that species diversity tends to be maximized at an intermediate dispersal rate, especially when habitat patches of vectored organisms constitute consumable resources for their vectors.

ecology↗

cryo-EM structure of a blue-shifted channelrhodopsin from Klebsormidium nitens.

Channelrhodopsins (ChRs) are light-gated ion channels and invaluable tools for optogenetic applications. Recent developments in multicolor optogenetics, in which different neurons are controlled by multiple colors of light simultaneously, have increased the demand for ChR mutants with more distant absorption wavelengths. Here we report the 2.9 [A]-resolution cryo-electron microscopy structure of a ChR from Klebsormidium nitens (KnChR), which is one of the most blue-shifted ChRs. The structure elucidates the 6-s-cis configuration of the retinal chromophore, indicating its contribution to a distinctive blue shift in action spectra. The unique architecture of the C-terminal region reveals its role in the allosteric modulation of channel kinetics, enhancing our understanding of its functional dynamics. Based on the structure-guided design, we developed mutants with blue-shifted action spectra. Finally, we confirm that UV or deep-blue light can activate KnChR-transfected precultured neurons, expanding its utility in optogenetic applications. Our findings contribute valuable insights to advance optogenetic tools and enable refined capabilities in neuroscience experiments.

biochemistry↗