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Biology subjects

Nandan, A. P.

Publications and source records attributed to Nandan, A. P..

2 recordsLinked to original sources

Optimal biochemical information processing at criticality

How cells utilize surface receptors for chemoreception is a recurrent question spanning between physics and biology over the past few decades. However, the dynamical mechanism for processing time-varying signals is still unclear. Using dynamical systems formalism to describe criticality in non-equilibrium systems, we propose generic principle for temporal information processing through phase-space trajectories using dynamic transient memory. In contrast to short-term memory, dynamic memory generated via ghost attractor enables signal integration depending on stimulus history, and thus balance between stability and plasticity in receptor responses. We propose that self-organization at criticality can arise through fluctuation-sensing mechanism, illustrated for the experimentally established epidermal growth factor sensing system. This framework applies irrespective of the intrinsic node dynamics or network size, as we show using also a basic neuronal model. Processing of non-stationary signals, a feature previously attributed only to neuronal networks, thus uniquely emerges for biochemical networks organized at criticality.

systems biology↗

A synthetic morphogenic perceptory cell

Reconstitution of artificial cells capable of transducing extracellular signals into cytoskeletal changes is a challenge in synthetic biology that will reveal fundamental principles of non-equilibrium phenomena of cellular morphogenesis and information processing. Here, we generated a life-like Synthetic Morphogenic Membrane System (SynMMS) by encapsulating a dynamic microtubule (MT) aster and a light-inducible signaling system driven by GTP/ATP chemical potential into cell-sized vesicles. The biomimetic design of the light-induced signaling system embodies the operational principle of morphogen induced Rho-GTPase signal transduction in cells. Activation of synthetic signaling promotes membrane-deforming growth of MT-filaments by dynamically elevating the membrane-proximal concentration of tubulin. The resulting membrane deformations enable the recursive coupling of the MT-aster with the signaling system, creating global self-organized morphologies that reorganize towards external light cues in dependence on prior sensory experience that is stored in the dynamically maintained morphology. SynMMS thereby signifies a step towards bio-inspired engineering of self-organized cellular morphogenesis.

synthetic biology↗