Biology subjects

Mueller, G.

Publications and source records attributed to Mueller, G..

7 recordsLinked to original sources

bioRxiv2025

Food-web coupling by mobile consumers has individual to ecosystem level effects

Mobile consumers serve as a ubiquitous link, coupling the dynamics and functions of different ecosystems, ranging from diel-vertical migration of zooplankton to seasonal movements of large ungulates. Despite mounting theoretical interest, experimental tests of the effects of consumer mobility in meta-ecosystems are virtually non-existent. Here, we used an experimental microcosm system to investigate how mobile consumers (Daphnia magna) mediate ecosystem biomass, community structure, and their own fitness by coupling spatially distinct aquatic ecosystems composed of two different protist communities. We found that consumer mobility significantly influenced the effect of consumption on ecosystem biomass and the growth and reproduction of the consumers, themselves. However, the direction and magnitude of these effects depended on community composition in the connected ecosystem. Further, we found consumer mobility consistently promoted the coexistence of a competing local species, regardless of community composition in the connected ecosystem. Our findings underscore the profound role of consumer mobility in shaping individual to ecosystem-level dynamics while emphasizing a strong mediating effect of community composition across the landscape.

ecology↗

bioRxiv2025

Effects of complex whole-body movements on EEG activity: a scoping review

The influence of movements on brain activity has been part of research for decades. Recent advancements in electroencephalography (EEG) coupled with a shift in focus towards the effects of complex whole-body movements provided additional inspirations in this area. Besides the metabolic load, the amount of information to be processed in parallel provides rough indications of its influence on central nervous activity. Accordingly, this scoping review aimed to synthesize studies investigating the acute effects of complex whole-body movements with increased parallel information processing on electrical brain activity. A comprehensive search across five scientific databases resulted in thirteen studies meeting the inclusion criteria. The results showed increased theta and alpha activity in frontal, central and parietal areas in most studies during and after movement. However, in other frequency bands the findings were not consistent. Comparisons between complex movements with varying parallel demands revealed a trend towards higher theta for movements with more parallel actions. Based on a consistent EEG methodology, future research should consider movement complexity not only related to the length of sequences but rather in terms of parallel motor activities as a moderator of brain activity to obtain more consistent results in the context of neural effects of movement exercise.

neuroscience↗

bioRxiv2024

Scrutinizing science to save lives: uncovering flaws in the data linking L-type calcium channels blockers to CRAC channels and heart failure.

Hypertension is estimated to affect almost 1 billion people globally and significantly increases risk of myocardial infarction, heart failure, stroke, retinopathy and kidney disease. One major front line therapy that has been used for over 50 years involves L-type Ca2+ channel blockers (LCCBs). One class of LCCBs is the dihydropyridine family, with amlodipine being widely prescribed regardless of gender, race, ethnicity or age. In 2020, Johnson et al.7 reported that all LCCBs significantly increased the risk of heart failure, and attributed this effect to non-canonical activation of store-operated Ca2+ entry. A major approach on which they based many of their arguments was to measure cytosolic Ca2+ using the fluorescent Ca2+ indicator dye fura-2. We recently demonstrated that amlodipine is highly fluorescent within cells and overwhelms the fura-2 signal, precluding the use of the indicator dye with amlodipine24. Our meta-analyses and prospective real world study showed that dihydropyridines were not associated with an increase in heart failure, likely explained by the lack of consideration by Johnson et al.7 of well-known confounding factors such as age, race, obesity, prior anti-hypertensive treatment or diabetes24. Trebak and colleagues have responded to our paper with a forthright and unwavering defence of their work27. In this paper, we carry out a forensic dissection of Johnson et al.,7 and conduct new experiments that address directly points raised by Trebak et al. 27. We show that there are major flaws in the design and interpretation of their key experiments, that fura-2 cannot be used with amlodipine, that there are fundamental mathematical misunderstandings and mistakes throughout their study leading to critical calculations on heart failure that are demonstrably wrong, and several of their own results are inconsistent with their interpretation. We therefore believe the study by Johnson et al. 7 is flawed at many levels and we stand by our conclusions.

physiology↗

bioRxiv2023

S1 hydrophobic residues alter the voltage sensing phosphatase enzymatic function and voltage sensing

The voltage sensing domain (VSD) is a four-helix modular protein domain that converts electrical signals into conformational changes, leading to open pores and active enzymes. In most voltage sensing proteins, the VSDs do not interact with one another and the S1-S3 helices are considered mainly as scaffolding. The two exceptions are the voltage sensing phosphatase (VSP) and the proton channel (Hv). VSP is a voltage-regulated enzyme and Hvs are channels that only have VSDs. To investigate the S1 contribution to VSP function, we individually mutated four hydrophobic amino acids in S1 to alanine (F127, I131, I134 and L137). We also combined these mutations to generate quadruple mutation designated S1-Q. Most of these mutations shifted the voltage dependence of activity to higher voltages though interestingly, not all substrate reactions were the same. The kinetics of enzymatic activity were also altered with some mutations significantly slowing down dephosphorylation. The voltage dependence of VSD motions were consistently shifted to lower voltages and indicated a second voltage dependent motion. Co-immunoprecipitation demonstrated that none of the mutations broke the VSP dimer indicating that the S1 impact could stem from intrasubunit and/or intersubunit interactions. Lastly, when the same alanine mutations were introduced into a genetically encoded voltage indicator, they dramatically altered the optical readings, making some of the kinetics faster and shifting the voltage dependence. These results indicate that the S1 helix in VSP plays a critical role in tuning the enzymes conformational response to membrane potential transients and influencing the function of the VSD.

biophysics↗

bioRxiv2023

Let there be nightlights: the ecological role of bioluminescence in a Costa Rican mushroom

Both marine and terrestrial organisms produce light enzymatically in a process called bioluminescence. Though the ecological role of light production is known for some species, such as fireflies and bacteria, the ecological role in mushroom-producing fungi remains relatively unexplored, particularly in Central America. Here, we discovered a bioluminescent mushroom in the high-elevation oak forests of Costa Rica. We developed mushroom models with Light-Emitting Diodes (LEDs) producing various colors: green, blue, red, and yellow. Over three consecutive evenings after sunset, we applied Tanglefoot invertebrate-trapping glue to both mushroom models and actual mushrooms, and collected the traps before sunrise, then identified the trapped invertebrates to Order. We found green LED traps attracted more invertebrates than non-lit control traps, suggesting that light functions to attract invertebrates. The majority of invertebrates attracted to the green lights were Dipteran flies, who would be capable of dispersing fungal spores. The higher-intensity green LEDs attracted more total invertebrates than the dimmer mushrooms, but the results were not significant. Though we predicted that the invertebrate assemblages attracted to green lights would be similar to the invertebrate assemblage attracted to actual mushrooms, the results were not significant. Similarly, the red, blue, and yellow LEDs attracted fewer invertebrates than the green LEDs, but the differences in community composition were not statistically significant. Our findings corroborate other similar studies in tropical regions that found bioluminescent mushrooms may attract invertebrates.

ecology↗

bioRxiv2021

Effect of A-tract-mediated linker histone orientation on trinucleosome compaction

Linker histones (LH) have been shown to preferentially bind to AT-rich DNA, particularly A-tracts, contiguous stretches of adenines. Using spFRET (single pair Forster/Fluorescence Resonance Energy Transfer), we recently found that the globular domain (gH) of Xenopus laevis H1.0b LH orients towards A-tracts on the linker-DNA (L-DNA) while binding on-dyad in LH:mononucleosome complexes. Here, we investigate the impact of this A-tract-mediated orientation of the gH on the compaction of higher-order structures by studying trinucleosomes as minimal models for chromatin. Two 600 bp DNA sequences were constructed, each containing three consecutive Widom 601 core sequences connected by about 40 bp L-DNA but differing in the positioning of A-tracts on either the outer or the inner L-DNAs flanking the first and third Widom 601 sequences. The two inner L-DNAs were fluorescently labelled at their midpoints. Trinucleosomes were reconstituted using the doubly labelled DNA, core histone octamers and H1.0b. SpFRET was performed for a range of NaCl concentrations to measure the compaction and whether gH orientations affected the stability of the trinucleosomes to salt-induced dissociation. While the LH compacted the trinucleosomes, the extent of compaction and the stability were similar for the two DNA sequences. Modeling constrained by the measured FRET efficiency suggests that the structures adopted by the trinucleosomes correspond to the standard zig-zagged two-helical start arrangement with the first and third nucleosomes stacked on top of each other. In this arrangement, the first and third LHs are insufficiently close to interact and affect compaction. Thus, despite differences in the positioning of the A-tracts in the sequences studied, LH binding compacts the corresponding trinucleosomes similarly. Why it mattersThe compaction and three-dimensional structure of chromatin affect the exposure of the DNA and thus regulate gene expression. Linker histone proteins bind to nucleosomes and thereby contribute to chromatin compaction. We here investigated whether the DNA A-tract-mediated orientation of a linker histone globular domain affects chromatin structure by using a trinucleosome as a minimal model for chromatin. Our observations suggest that the trinucleosome structure and compaction are robust against differences in linker histone globular domain orientations. eTOC blurbWe investigate whether DNA sequences, such as adenine-tracts, and sequence-induced linker histone reorientation affect chromatin structure. Using trinucleosomes as model systems for chromatin, we demonstrate that the chromatin structure and compaction are robust to the studied DNA sequence differences and sequence-induced linker histone orientation.

biophysics↗

bioRxiv2021

Rapid adaptation and remote delivery of undergraduate research training during the COVID 19 Pandemic

COVID-19 continues to alter daily life around the globe. Education is particularly affected by shifts to distance learning. This change has poignant effects on all aspects of academic life, including the consequence of increased mental stress reported specifically for students. COVID-19 cancellations of many summer fellowships and internships for undergraduates across the country increased students uncertainty about their educational opportunities and careers. When the pandemic necessitated elimination of on-campus programming at Mayo Clinic, a new program was developed for remote delivery. Summer Foundations in Research (SFIR) was drafted around 4 aims: 1) support the academic trajectory gap in research science created by COVID-19; 2) build sustainable scientific relationships with mentors, peers, and the community; 3) create opportunities for participants to share and address concerns with their own experiences in the pandemic; and 4) provide support for individual wellbeing. SFIR included research training, but also training in communication through generative Dialogue and resilience through Amit Soods SMART program. 170 participants were followed for outcomes in these spaces. Knowledge of and interest in careers involving biomedical research rose significantly following SFIR. Participants mean confidence levels in 12 Key areas of research rose between 0.08 to 1.32 points on a 7-point scale. The strongest gains in mean confidence levels were seen in designing a study and collaborating with others. SFIR participants demonstrated gains in perceived happiness, and measured resilience and a reduction in stress. Participants qualitative responses indicated exceptionally positive mentor relationships and specific benefit of both the SMART program and Dialogue.

scientific communication and education↗