Search bioRxiv⌕ Search

Biology subjects

Morvan, E.

Publications and source records attributed to Morvan, E..

5 recordsLinked to original sources

ATP-driven membrane binding and polymerization of bacterial actin MreB promotes local membrane fluidization

The bacterial actin homologue MreB plays a key role in rod cell shape determination. We recently showed that MreB from the Gram-positive bacterium Geobacillus stearothermophilus (MreBGs) polymerizes into straight pairs of protofilaments in the presence of both ATP and a lipid surface. Membrane interaction is thought to be mediated by electrostatic interactions with anionic lipids, with final anchoring relying on two spatially close hydrophobic motifs that protrude from the MreBGs monomers, forming a putative membrane-insertion domain. Here, we determined the binding properties of ATP and ADP to MreBGs using fluorescence anisotropy, and monitored ATP-mediated binding and polymer formation on lipid bilayers using liposome binding assays and AFM, respectively. Finally, we used solid-state NMR to visualize the interaction between the membrane and MreBGs at the atomic level. Our findings reveal that MreBGs has similar affinity for both ATP and ADP, unlike eukaryotic actin. We also show that monomeric MreBGs establishes peripheral contacts with the membrane likely through electrostatic interactions, while ATP-induced MreBGs filaments insert into the lipid bilayer without interfering with the membrane lamellar phase and have a significant local fluidifying effect. Statement of significanceBacteria rely on the actin-like protein MreB to determine and maintain their cell shape, like actin does in eukaryotic cells. To perform its tightly regulated morphogenetic function, MreB forms membrane-associated nanofilaments in vivo, which control the cell wall biosynthetic machinery. We recently demonstrated that, in vitro, MreB from the Gram-positive bacterium Geobacillus stearothermophilus requires both ATP and lipids to polymerize into pairs of filaments. Here, we show that in the presence of ATP, Geobacillus MreB forms membrane-bound filaments that directly impact local membrane fluidity, which could translate into a regulatory effect on cell wall synthetic enzymes. We further reveal that MreB binds both ATP and ADP with similar affinity, unlike eukaryotic actin, which preferentially binds ATP over ADP, and speculate that this could be a mechanism modulating the pool of polymerization-competent MreB in bacteria.

biophysics↗

Characterization of widely conserved novel pigment production in Bacillus subtilis species

Bacillus subtilis is widely studied in the microbial secondary metabolite (SM) field due to its rich variety of important natural products and genetic tractability. However, identification of novel SMs and their biosynthetic gene cluster (BGCs) has become increasingly difficult, especially in Bacilli, as the tools for screening and genome mining are dependent on clear function or similarity to already known BGCs. Pigments are SMs identified by their absorption of visible light, resulting in a certain color perceived by our eyes at sufficient concentrations. Thereby, pigments provide the evidence of a BGC without knowing the sequence or function. Expanding the known repertoire of SM BGCs with novel BGCs will further reinforce identification of a broader set of BGCs by mining tools such as antiSMASH. Here, we study a pigment observed in B. subtilis soil isolate MB9_B4 on certain media. We characterize the conditions where this pigment is produced and identify the corresponding BGC using a comparative genomic approach exploiting our strain collection containing other isolates with pigment production ability. The responsible BGC carried several genes, which were annotated as parts of the tryptophan biosynthesis pathway, possibly originating from a duplication and divergence of an originally primary metabolism. Identification of the pigment gene cluster additionally lead to the discovery of additional pigment BGC carrier B. subtilis isolates, some of which were described at the earliest in 1896 under the name Bacillus aterrimus, with a name referring to a dark pigmentation (the Latin "aterrimus" meaning very black). In addition, we employed solid-state nuclear magnetic resonance and Fourier transform infrared spectroscopies to characterize the chemical groups of the pigment. This study describes the chemical and biological features of a new class of SM BGC, which we hope will serve to improve the current BGC discovery pipelines in Bacilli.

microbiology↗

CapP mediates the structural formation of biofilm-specific pili in the opportunistic human pathogen Bacillus cereus

Polymeric proteinaceous filaments are structural scaffolds that diversify the functionality of the bacterial extracellular matrix. Here, we report a previously uncharacterized bacterial factor called bc1280 that is exclusive to B. cereus group and indispensable for the establishment of a biofilm lifestyle. We propose that BC1280 is an essential chaperone for the assembly of the filamentous platform that tightly controls the polymerization of heteropili containing CalY and TasA as major subunits in a concentration-dependent manner. Additionally, BC1280 modulates the expression of EPS via an uncharacterized pathway that is activated by a protease and an ECF-type sigma factor. The pilus biogenesis system described in this work highlights the complexity of extracellular matrix assembly in B. cereus and introduces a singular three-part structuration mechanism during biofilm formation and maturation. Graphical abstractDuring the process of biofilm formation in B. cereus, TasA, CapP, and CalY serve as the main components, in addition to other factors, ensuring that the extracellular matrix correctly assembles. The three proteins are produced and processed by the signal peptidase SipW and subsequently secreted through the Sec pathway in an unfolded conformation. At early biofilm formation stages, CapP is initially present at low levels, associates with the cell wall and is secreted into the ECM where it interacts with unfolded subunits of CalY, facilitating CalY folding and initiating fibril growth. CalY serves as a nucleator for incorporating TasA subunits into the pilus, forming TasA-CalY heteropolymers. Once the ECM scaffold is established, CapP levels increase, forming stable complexes with CalY that prevent its folding and arrest filament growth. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=142 SRC="FIGDIR/small/582368v2_ufig1.gif" ALT="Figure 1"> View larger version (55K): org.highwire.dtl.DTLVardef@df9d9dorg.highwire.dtl.DTLVardef@e4b712org.highwire.dtl.DTLVardef@1af2421org.highwire.dtl.DTLVardef@16d02c7_HPS_FORMAT_FIGEXP M_FIG C_FIG

microbiology↗

The diversity of splicing modifiers acting on A-1 bulged 5'-splice sites reveals rules to guide rational design

Non-physiological alternative splicing patterns are associated with numerous human diseases. Among the strategies developed to treat these diseases, small molecule splicing modifiers are emerging as a new class of RNA therapeutics. The SMN2 splicing modifier SMN-C5 was used as a prototype to understand their mode of action and discover the concept of 5-splice site bulge repair. However, different small molecules harbouring a similar activity were also identified. In this study, we combined NMR spectroscopy and computational approaches to determine the binding modes of other SMN2 and HTT splicing modifiers at the interface between U1 snRNP and an A-1 bulged 5-splice site. Our results show that the other splicing modifiers interact with the intermolecular RNA helix epitope containing an unpaired adenine within a G-2A-1G+1U+2 motif, which is essential for their biological activity. We also determined structural models of risdiplam, SMN-CX, and branaplam bound to RNA, and solved the solution structure of the most divergent SMN2 splicing modifier, SMN-CY, in complex with the RNA helix. These findings not only deepen our understanding of the chemical diversity of splicing modifiers that target A-1 bulged 5-splice sites, but also identify common pharmacophores required for modulating 5-splice site selection with small molecules.

molecular biology↗

Emergence of stealth polymorphs that escape α-synuclein amyloid monitoring, take over and acutely spread in neurons

The conformational strain diversity characterizing -synuclein (-syn) amyloid fibrils is possibly at the origin of the different clinical presentations of synucleinopathies. Experimentally, various -syn fibril polymorphs have been obtained from distinct fibrillization conditions by altering the medium constituents and were selected by amyloid monitoring using the probe Thioflavin T (ThT). We report here that besides classical ThT positive products, fibrillization in saline simultaneously gives rise to competing fibril polymorphs that are invisible to ThT (stealth polymorphs), and that can take over. Due to competition, spontaneous generation of such stealth polymorphs bears on the apparent fibrillization kinetics and on the final plateau values. Their emergence has thus been ignored so far or mistaken for fibrillization inhibitions/failures. Compared to their ThT-positive counterparts, and as judged from their chemical shift resonances fingerprint, these new stealth polymorphs present a yet undescribed atomic organization and show an exacerbated propensity (approx. 20-fold) towards self-replication in cortical neurons. They also trigger a long distance synucleinopathic spread along nigro-striatal projections in vivo. In order to rapidly screen fibrillization products for the presence of such stealth polymorphs, we designed a simple multiplexed assay that can be easily and rapidly operated. This assay allows us to demonstrate the sustainability of the conformational replication of these novel and particularly invasive strains. It should also be of help to avoid erroneous upstream interpretations of fibrillization rates based on sole ThT, and to expedite further structural and functional characterization of stealth amyloid assemblies. One Sentence Summarystealth -synuclein fibrils take over

neuroscience↗