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Biology subjects

Montina, T.

Publications and source records attributed to Montina, T..

2 recordsLinked to original sources

Improved 1H NMR and ATR-FTIR approaches for structural characterization of high-G-block and high-M-block alginic acids isolated from sugar kelp by a two-step gelation method

Two low-molecular-weight alginic acid fractions, G-block-rich SKP-G1 and M-block-rich SKP-G2, were sequentially isolated from a hot-water extract of sugar kelp (Saccharina latissima) alcohol-insoluble residue by acetic acid-induced and subsequent freeze-thaw-induced gelation. High-field (700 MHz) 2D 1H-1H COSY and TOCSY spectroscopy enabled comprehensive cross-peak assignments for selected alginate diad and triad sequences, supporting interpretation of 1D 1H NMR spectra. Sequence frequencies were combined with previously established inequalities [1] to calculate constrained frequency ranges for homoblocks beyond the triad level. For selected homoblock lengths up to a degree of polymerization of 18, comparison of the experimentally derived frequency ranges with frequencies predicted by chain-growth statistical models ruled out the Bernoulli model for both fractions and the first-order Markov model for SKP-G1. Applying the recently developed logarithmic cosine transformation (LCT) algorithm [2] to first- and second-derivative ATR-FTIR spectra enhanced the visualization of subtle spectral features and produced distinct fingerprints for the two fractions. As a proof of concept, LCT-transformed derivative ATR-FTIR spectra yielded distinct score distributions for the fractions in principal component analysis, suggesting their potential for chemometric differentiation of alginates with different block structures. In conclusion, extending 1H NMR-based sequence analysis to calculate constrained frequency ranges for homoblock polyads beyond the triad level, together with LCT-transformed derivative ATR-FTIR fingerprinting, expands the analytical toolkit for alginate block structure characterization.

biochemistry↗

2D HSQC-derived "dark forest" image with enhanced local resolution via first derivative processing-logarithmic cosine transformation (FDP-LCT): Demonstration on per-O-ethylated kappa- and iota-carrageenans

Solution-state two-dimensional (2D) 1H-13C HSQC NMR is a powerful tool for polysaccharide structure elucidation but often suffers from limited sensitivity and broad peaks due to the low natural abundance of 13C and poor digital resolution of the indirect dimension, respectively, as well as the typically low concentration and high viscosity of polysaccharide solutions. It is therefore pivotal to improve the resolution of 2D 1H-13C HSQC spectra for accurate peak picking and assignment, particularly in the indirect 13C dimension. In this study, we developed an algorithm that combines first derivative processing with a novel logarithmic cosine transformation (FDP-LCT) to convert 2D 1H-13C HSQC spectra into local-resolution-enhanced images resembling a dark forest of straight, densely standing trees. These images revealed sharpened spectral features and enabled extraction of precise 1H and 13C chemical shifts, as demonstrated using per-O-ethylated kappa-and iota-carrageenans, two sulfated galactans differing only by a single substitution at the O-2 position of anhydrogalactose. In conclusion, this approach provides an effective post-acquisition strategy for enhancing digital resolution in 2D HSQC spectra and improving the structural analysis of closely related complex polysaccharides. Graphic abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=77 SRC="FIGDIR/small/689839v1_ufig1.gif" ALT="Figure 1"> View larger version (29K): org.highwire.dtl.DTLVardef@c85f3dorg.highwire.dtl.DTLVardef@e4ded2org.highwire.dtl.DTLVardef@1e0b7b5org.highwire.dtl.DTLVardef@3cebcf_HPS_FORMAT_FIGEXP M_FIG C_FIG Highlights- An algorithm combining first derivative processing and logarithmic cosine transformation was developed for 2D HSQC. - The algorithm was used to boost the local resolution of 2D HSQC spectra of the per-O-ethylated carrageenans. - Structures were distinguished by complete interpretation of 2D NMR spectra. - A post-processing workflow was developed to facilitate chemical shift extraction from sharpened HSQC.

biochemistry↗