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Biology subjects

Montgomery, D.

Publications and source records attributed to Montgomery, D..

4 recordsLinked to original sources

Minimizing inferential bias in the theory and design of nutritional experiments through the application of the equilateral mixture triangle

Animal nutritionists seek to understand how animals regulate the intake and balance of multiple nutrients, yet the design and analysis of such experiments are often limited by how nutrient spaces are represented. The geometric framework for nutrition (GFN) provides a powerful means to visualize nutrient interactions, but when more than two nutrients are considered, most empirical studies employ right-angled mixture triangles (RMTs). While convenient, this coordinate system can introduce visual artifacts that can bias inference. Here, we reintroduce the equilateral mixture triangle (EMT) as a complementary and biologically meaningful framework that preserves proportional relationships among nutrients and connects directly with the design principles of mixture experiments in engineering disciplines, where it is more commonly known as a simplex. The simplex provides a consistent bridge between theory and experimentation, allowing the same geometric representation to be used for choice and no-choice assays. For choice experiments, we extend GFN theory to show that animal feeding trajectories are bounded by the convex hull of available foods, show how it can scale to higher-dimensional nutrient systems, and develop statistical tests to distinguish between random choice and the defense of an intake target. For no-choice experiments, we demonstrate how simplex mixture designs can be integrated with response surface methodologies to model multivariate performance landscapes, identify optimal nutrient ratios, and avoid biologically unrealistic regions of nutrient space. For both types of experiments, we provide simulated case studies on how to design studies around the simplex. Together, these developments refine both the theoretical and experimental foundations of nutritional ecology, providing clear guidance for designing, visualizing, and interpreting multidimensional studies of nutrient regulation with diverse applications across ecological and agricultural disciplines.

animal behavior and cognition↗

Targeted Polymersomes Enable Enhanced Delivery to Peripheral Nerves Post-Injury

The gold standard therapy for peripheral nerve injuries involves surgical repair, which is invasive and leads to major variations in therapeutic outcomes. Because of this, smaller injuries often go untreated. However, alternative, non-invasive routes of administration are currently unviable due to the presence of the blood-nerve barrier (BNB), which prevents passage of small molecules from the blood into the endoneurium and the nerve. This paper demonstrates that ligands on the surface of nanoparticles, called polymersomes, can enable delivery to the nerve through non-invasive intramuscular injections. Polymersomes made from polyethylene glycol (PEG)-b-polylactic acid (PLA) were conjugated with either apolipoprotein E (ApoE) or rabies virus glycoprotein-based peptide, RVG29 (RVG) and loaded with near infrared dye, AlexaFluor647. ApoE was used to target receptors upregulated in post-injury inflammation, while RVG targets neural specific receptors. Untagged, ApoE-tagged, and RVG-tagged polymersomes were injected at 100 mM either intranerve (IN) or intramuscular (IM) into Sprague Dawley rats post sciatic nerve injury. The addition of the ApoE and RVG tags enabled increased AlexaFluor647 fluorescence in the injury site at 1 hour post IN injection compared to the untagged polymersome control. However, only the RVG-tagged polymersomes increased AlexaFluor647 fluorescence after intramuscular injection. Ex vivo analysis of sciatic nerves demonstrated that ApoE-tagged polymersomes enabled the greatest retention of AlexaFluor647 regardless of the injection route. This led us to conclude that using ApoE to target inflammation enabled the greatest retention of polymersome-delivered payloads while RVG to target neural cells more specifically enabled the penetration of polymersome-delivered payloads. Observations were confirmed by calculating area under the curve pharmacokinetic parameters and the use of a two-compartment pharmacokinetic model.

bioengineering↗

Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity

AbstractEstablishment of microbial communities in neonatal calves is vital for their growth and overall health. Feed type and associated gastrointestinal tract morphophysiological changes occurring during the pre-weaning, weaning, and post-weaning phases are known to induce shifts in microbial community diversity, structure, and function. However, while the process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in fecal samples from six dairy cattle collected at 24 different time points during the pre-weaning (day 1-48), weaning (day 49-60), and post-weaning (3-12 months) stages. Quantitative PCR (qPCR) indicated that AGF colonize the calves GIT within 24 hours after birth, with AGF loads slowly increasing during pre-weaning/weaning phases and drastically increasing post-weaning. Culture- independent amplicon surveys identified higher AGF alpha diversity during pre-weaning/ weaning phases, compared to post-weaning. Further, the AGF community structure underwent a drastic shift post-weaning, from a community enriched in the genera Khoyollomyces, Orpinomyces, AL3, and NY8 (some of which commonly encountered in hindgut fermenters) to one enriched in the genera Caecomyces, Piromyces, Pecoramyces, and Cyllamyces, commonly encountered in adult ruminants. Inter-calf community variability was low in the pre- weaning/weaning phases but increased post-weaning. Finally, pairwise comparison of AGF community between calves day 1 post-birth and their mothers suggest a major role for maternal transmission, with additional input from cohabitating subjects. The distinct pattern of AGF progression in calves could best be understood in-light of their narrower niche preferences, metabolic specialization, and physiological optima when compared to bacteria, hence eliciting a unique response to changes in feeding pattern and associated structural development in the GIT of calves during maturation.

microbiology↗

3D Models of glycosylated SARS-CoV-2 spike protein suggest challenges and opportunities for vaccine development

Here we have generated 3D structures of glycoforms of the spike (S) glycoprotein from SARS-CoV-2, based on reported 3D structures and glycomics data for the protein produced in HEK293 cells. We also analyze structures for glycoforms representing those present in the nascent glycoproteins (prior to enzymatic modifications in the Golgi), as well as those that are commonly observed on antigens present in other viruses. These models were subjected to molecular dynamics (MD) simulation to determine the extent to which glycan microheterogeneity impacts the antigenicity of the S glycoprotein. Lastly, we have identified peptides in the S glycoprotein that are likely to be presented in human leukocyte antigen (HLA) complexes, and discuss the role of S protein glycosylation in potentially modulating the adaptive immune response to the SARS-CoV-2 virus or to a related vaccine. The 3D structures show that the protein surface is extensively shielded from antibody recognition by glycans, with the exception of the ACE2 receptor binding domain, and also that the degree of shielding is largely insensitive to the specific glycoform. Despite the relatively modest contribution of the glycans to the total molecular weight (17% for the HEK293 glycoform) the level of surface shielding is disproportionately high at 42%.

immunology↗