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Molla-Herman, A.

Publications and source records attributed to Molla-Herman, A..

2 recordsLinked to original sources

Transcriptomic analysis of meiotic genes during the mitosis-to-meiosis transition in Drosophila females

Germline cells produce gametes, which are specialized cells essential for sexual reproduction. Germline cells first amplify through several rounds of mitosis before switching to the meiotic program, which requires specific sets of proteins for DNA recombination, chromosome pairing and segregation. Surprisingly, we previously found that some proteins of the synaptonemal complex, a prophase I meiotic structure, are already expressed and required in the mitotic region of Drosophila females. Here, to assess if additional meiotic genes were expressed earlier than expected, we isolated mitotic and meiotic cell populations to compare their RNA content. Our transcriptomic analysis reveals that all known meiosis I genes are already expressed in the mitotic region, however, only some of them are translated. As a case study, we focused on mei-W68, the Drosophila homologue of Spo11, to assess its expression at both the mRNA and protein levels, and used different mutant alleles to assay for a pre-meiotic function. We could not detect any functional role for Mei-W68 during homologous chromosome pairing in dividing germ cells. Our study paves the way for further functional analysis of meiotic genes expressed in the mitotic region. Article SummaryGermline cells, crucial for sexual reproduction, were thought to switch to meiosis only after several rounds of mitosis. Surprisingly, a few meiotic proteins were found active in the mitotic phase of female flies. Here, we discovered that all known meiosis genes were expressed during mitosis, but only some produced proteins. This study suggests that genes related to reproduction are active earlier than expected, prompting further exploration into their functions during early cell division.

developmental biology↗

tRNA fragments (tRFs) populations analysis in mutants affecting tRNAs processing and tRNA methylation

tRNA fragments (tRFs) are a class of small non-coding RNAs (sncRNAs) derived from tRNAs. tRFs are highly abundant in many cell types including stem cells and cancer cells, and are found in all domains of life. Beyond translation control, tRFs have several functions ranging from transposon silencing to cell proliferation control. However, the analysis of tRFs presents specific challenges and their biogenesis is not well understood. They are very heterogeneous and highly modified by numerous post-transcriptional modifications. Here we describe a bioinformatic pipeline to study tRFs populations and shed light onto tRNA fragments biogenesis. Indeed, we used small RNAs Illumina sequencing datasets extracted from wild type and mutant Drosophila ovaries affecting two different highly conserved steps of tRNA biogenesis: 5pre-tRNA processing (RNase-P subunit Rpp30) and tRNA 2-O-methylation (CG7009 and CG5220). Using our pipeline, we show how defects in tRNA biogenesis affect nuclear and mitochondrial tRFs populations and other small non-coding RNAs biogenesis, such as small nucleolar RNAs (snoRNAs). This tRF analysis workflow will advance the current understanding of tRFs biogenesis, which is crucial to better comprehend tRFs roles and their implication in human pathology.

bioinformatics↗