Biology subjects

Michael, A.

Publications and source records attributed to Michael, A..

4 recordsLinked to original sources

bioRxiv2026

The Estuary Effect: Variations in Temperature and Salinity Alter msh Promoter Activity in Vibrio cholerae

Vibrio cholerae, the facultative pathogen underlying cholera, naturally inhabits warm aquatic estuaries. Environmental persistence is enhanced by the ability of V. cholerae to colonize host reservoirs and form multicellular biofilms, causing seasonally endemic outbreaks in many tropical regions. Most toxigenic strains utilize the type IVa mannose-sensitive hemagglutinin (MSHA) pilus for host reservoir colonization and biofilm formation. Temperature and salinity can alter V. cholerae biofilm formation, yet their impact on MSHA production specifically remains largely unknown. Here, we utilized transcriptional reporters of predicted msh promoters (msh-P1/msh-P2/msh-P3) and functional assays, to determine temperature and salinity impacts on msh expression and pilus biogenesis. Under standard laboratory conditions (30{degrees}C, 1% NaCl) only msh-P1/P2 are active and inversely-coordinated with one another. Both msh-P1/P2 activity were elevated by high temperature (37{degrees}C) and low salinity (0.25%/0.5% NaCl), and reduced by low temperature (20{degrees}C/25{degrees}C) and high salinity (2%/3% NaCl). Temperature-mediated alterations in promoter activity were not immediately reflected in changes to cell-surface MSHA levels, whereas high salinity led to decreased MSHA production. Combining high temperature (37{degrees}C) and high salinity (2%/3% NaCl), attenuated the salinity-mediated reduction of msh-P1/P2 activity. Biofilm biomass levels were only substantially heightened at 25{degrees}C and 20{degrees}C, likely a result of no temperature-dependent changes in cell-surface MSHA, and additional temperature-controlled biofilm regulation previously described. We also found msh-P1/P2 promoter activity and MSHA production varies widely across toxigenic O1 and O139 serogroups despite complete sequence homology. These results shed new light on how key signals regulate MSHA pilus production to support V. cholerae persistence in aquatic environments.

microbiology↗

bioRxiv2025

Selective transcriptomic recovery by (2R,6R)-hydroxynorketamine in opioid-abstinent mice: Machine learning identifies predictive biomarkers

BackgroundOpioid abstinence induces persistent emotional disturbances and widespread neuroplastic changes, in areas of the brain including the hippocampus. Although ketamine and its metabolite (2R,6R)-hydroxynorketamine (HNK) show potential in reversing opioid abstinence-related deficits in rodents, the molecular mechanisms underlying their efficacy remain poorly understood. MethodsMale C57BL/6J mice underwent a 3-week opioid abstinence paradigm, followed by a single (2R,6R)-HNK (10 mg/kg, i.p.) or saline injection on day 28. Sucrose and social preference tests were used to assess behavioral deficits. We conducted RNA sequencing of ventral hippocampal tissue from these mice, followed by differential gene expression and functional enrichment analyses. Additionally, Random Forest machine was applied to identify predictive differentially expressed genes (DEGs) associated with (2R,6R)-HNK treatment response. ResultsTranscriptomic analysis identified 206 DEGs in morphine-abstinent mice without treatment compared to opioid-naive controls (MOR-SAL vs. SAL-SAL), implicating altered immune signaling, synaptic function, and structural plasticity. Comparison of opioid-abstinent mice treated with (2R,6R)-HNK to opioid-naive controls (MOR-HNK vs. SAL-SAL) revealed 186 residual DEGs, enriched for Th17-mediated immune and fear regulation pathways, suggesting a persistent intermediate molecular phenotype despite normalized behavioural scores. DEGs overlap analysis between MOR-HNK vs. MOR-SAL and MOR-SAL vs. SAL-SAL indicated that (2R,6R)-HNK treatment reversed 55 DEGs in opioid-abstinent mice, including Transthyretin (Ttr) and T-cell surface glycoprotein (Cd5) expression levels. Machine learning identified interleukin 1 receptor accessory protein-like 1 (Il1rapl1) and cytotoxic T lymphocyte-associated protein 2 beta (Ctla2b) as top predictors of (2R,6R)-HNKs treatment response. Notably, while (2R,6R)-HNK induces transcriptional changes in opioid-naive mice (SAL-HNK), it does not affect behavior compared to untreated controls (SAL-SAL). In contrast, its therapeutic effects are evident in morphine-abstinent mice (MOR-HNK), highlighting its context-dependent efficacy. Conclusion(2R,6R)-HNK promotes both transcriptional and behavioral recovery in opioid-abstinent mice, reversing key gene expression changes. However, persistent dysregulation of neuroimmune and emotion-related pathways suggests an intermediate molecular state, reflecting ongoing recovery.

neuroscience↗

bioRxiv2023

(2R,6R)-hydroxynorketamine facilitates extinction and prevents emotional impairment and stress-induced reinstatement in morphine abstinent mice

Opioid addiction is a pressing public health concern marked by frequent relapse during periods of abstinence, perpetuated by negative affective states and anhedonia-driven behaviors. In addition to the current epidemic that was declared in the U.S.A., opioid-related deaths are increasing in other countries around the world. Classical antidepressants, or the currently prescribed opioid substitution pharmacotherapies have limited efficacy to reverse maladaptive behavioral responses, negative affect or prevent relapse in opioid abstinent individuals. Here, by establishing and using novel mouse models for the study of opioid addiction, we demonstrate, for the first time, the therapeutic potential of ketamines metabolite, (2R,6R)-hydroxynorketamine (HNK). In particular, our studies showcase (2R,6R)-HNKs ability to reverse conditioning to sub-effective doses of morphine in stress-susceptible mice, prevent conditioned-place aversion and mitigate acute somatic withdrawal symptoms in opioid-dependent animals. In addition, we show that this metabolite reverses anhedonia, anxiety-like behaviors, cognitive impairment, and general stress susceptibility associated with protracted opioid withdrawal, thereby presenting a promising therapeutic avenue for opioid relapse prevention. Our results strongly suggest that (2R,6R)-HNK, potentially by augmenting downstream brain-derived neurotrophic factor (BDNF) and GluN2A N-methyl-D-aspartate receptor signaling, effectively reverses maladaptive behavioral responses typical of protracted opioid abstinence. Furthermore, it facilitates the extinction of opioid conditioning and prevents stress-induced reinstatement of opioid-seeking behaviors. Our findings highlight how (2R,6R)-HNK, through an enhancement of synaptic plasticity in mood-regulating brain areas, has the potential to be an effective, next-generation pharmacotherapy for opioid use disorders by addressing emotional disturbances associated with protracted abstinence. SIGNIFICANCE STATEMENTOur studies represent a comprehensive exploration into the critical facets of opioid addiction and abstinence, offering critical insights into the significant potential of (2R,6R)-HNK as a treatment for this disorder. By unraveling the complex dynamics of opioid withdrawal and addressing the profound emotional disturbances underlying relapse vulnerability, our findings illuminate a promising innovative avenue for therapeutic intervention. The demonstrated ability of (2R,6R)-HNK to reverse maladaptive behaviors emerging during protracted opioid abstinence, facilitate extinction of opioid conditioning, prevent stress-induced reinstatement, represents a paradigm shift in addiction research. These revelations not only deepen our comprehension of the neurobehavioral complexities associated with opioid abstinence but also underscore the profound implications of (2R,6R)-HNK as a prospective pharmacotherapy in mitigating the devastating impact of opioid use disorder, potentially transforming addiction treatment strategies.

neuroscience↗

bioRxiv2022

Readout of histone methylation by Trim24 locally restricts chromatin opening by p53

The genomic binding sites of the transcription factor (TF) and tumour suppressor p53 are unusually diverse in regards to their chromatin features, including histone modifications, opening the possibility that chromatin provides context-dependence for p53 regulation. Here, we show that the ability of p53 to open chromatin and activate its target genes is indeed locally restricted by its cofactor Trim24. Trim24 binds to both p53 and unmethylated lysine 4 of histone H3, thereby preferentially locating to those p53 sites that reside in closed chromatin, while it is deterred from accessible chromatin by lysine 4 methylation. The presence of Trim24 increases cell viability upon stress and enables p53 to impact gene expression as a function of the local chromatin state. These findings link histone methylation to p53 function and illustrate how specificity in chromatin can be achieved, not by TF-intrinsic sensitivity to histone modifications, but by employing chromatin-sensitive cofactors which locally modulate TF function.

genomics↗