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Biology subjects

Metz, S.

Publications and source records attributed to Metz, S..

4 recordsLinked to original sources

A curated dataset and web application for Integrative Analysis of Ancient DNA from Britain and Ireland

In recent years, genome-wide data from thousands of ancient human remains have been sequenced, offering unprecedented insights into past populations. This vast dataset of ancient human genomes and their associated metadata holds immense value for archaeologists, anthropologists, and biologists. However, extracting insights often requires advanced bioinformatics knowledge, creating barriers for non-experts. To address this challenge, we present a curated dataset and user-friendly web application for published genome-wide data from ancient Britain and Ireland, including new data produced by the COMMIOS Project. The platform integrates visualization tools, enabling researchers to explore genetic connections between ancient and modern populations without requiring bioinformatics expertise.

genetics↗

Environmental heterogeneity ruling the action of ecological processes over the bacterial metacommunity assembly

Determining which processes take place in the spatial distribution of bacterioplankton metacommunities has been a central goal of microbial ecology. In freshwater ecosystems, selection has been spotted as the main driver shaping bacterial community. However, its relative importance compared with others processes (dispersal, drift, diversification) may depend on spatial heterogeneity and dispersal rates within a metacommunity. Still, a decrease in the role of selection is expected with increasing dispersal homogenization. Here, we investigate the main ecological processes modulating the bacterial assembly in contrasting scenarios of environmental heterogeneity. We carried out a spatiotemporal survey in the floodplain system of Parana River. The bacterioplankton metacommunity was studied by a step-forward analysis combining different statistical inferences based on the phylogenetic and taxa turnover as well as co-occurrence networks. We found that selection was the main process even at both extremes of environmental heterogeneity and homogeneity, challenging the general view that the strength of selection is weakened due to dispersal homogenization. The ecological processes acting on the community also determined the complexity and randomness of bacterial networks. The heterogeneous selection promoted greater network complexity increasing the {beta}-diversity, and bacterial associations were more random with the increasing influence of stochasticity. Finally, the spatiotemporal heterogeneity was an important factor determining the number and identity of keystone taxa in the system. Integrating all these empirical evidences we propose a new conceptual model that elucidates how the environmental heterogeneity guides the action of ecological processes shaping the bacterial metacommunity.

ecology↗

Diversity of photosynthetic picoeukaryotes in eutrophic shallow lakes as assessed by combining flow cytometry cell-sorting and high throughput sequencing

Photosynthetic picoeukaryotes (PPE) are key components of primary production in marine and freshwater ecosystems. In contrast with those of marine environments, freshwater PPE groups have received little attention. In this work, we used flow cytometry cell sorting, microscopy and metabarcoding to investigate the composition of small photosynthetic eukaryote communities from six eutrophic shallow lakes in South America, Argentina. We compared the total molecular diversity obtained from PPE sorted populations as well as from filtered total plankton samples (FTP). Most reads obtained from sorted populations belonged to the classes: Trebouxiophyceae, Chlorophyceae and Bacillariophyceae. We retrieved sequences from non-photosynthetic groups, such as Chytridiomycetes and Ichthyosporea which contain a number of described parasites, indicating that these organisms were probably in association with the autotrophic cells sorted. Dominant groups among sorted PPEs were poorly represented in FTP and their richness was on average lower than in the sorted samples. A significant number of operational taxonomic units (OTUs) were exclusively found in sorting samples, emphasizing that sequences from FTP underestimate the diversity of PPE. Moreover, 22% of the OTUs found among the dominant groups had a low similarity (<95%) with reported sequences in public databases, demonstrating a high potential for novel diversity in these lakes.

ecology↗

Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signaling

Introductory Paragraph Introductory Paragraph Materials and Methods tir-1 3'UTR mutant tir-1::gfp CrispR/Cas9 repair templates References The maintenance of proteostasis is crucial for any organism to survive and reproduce in an ever-changing environment, but its efficiency declines with age1,2. Posttranscriptional regulators such as microRNAs control protein translation of target mRNAs with major consequences for development, physiology, and longevity3,4. However, the precise function of lifespan- determining microRNAs remains poorly understood. Here we show that the microRNA mir-71 controls organismal proteostasis and aging in Caenorhabditis elegans by regulating its conserved target tir-1 in AWC ol ...

cell biology↗