Biology subjects

Merle, M.

Publications and source records attributed to Merle, M..

6 recordsLinked to original sources

bioRxiv2026

Evolutionary Dynamics of the Complete Chemosensory Repertoire in Kissing Bugs of the Genus Rhodnius: Divergent Odorant Receptors Contrast with Conserved Gene Families

Chemosensory systems play a central role in host detection, feeding behavior, and habitat selection in hematophagous insects. Here, we performed a comparative evolutionary analysis of chemosensory gene repertoires across 13 species of the Chagas disease vector genus Rhodnius. While gustatory receptors (GRs), ionotropic receptors (IRs), odorant-binding proteins (OBPs), and chemosensory proteins (CSPs) remained globally conserved, odorant receptors (ORs) displayed extensive lineage-specific expansions, tandem duplications, dynamic transcriptomic regulation, and recurrent signatures of positive selection. Major OR expansions were observed in Rhodnius robustus and Rhodnius colombiensis, suggesting increased sensory diversification in ecologically heterogeneous lineages. In contrast, conserved GR1 expression supports the maintenance of ancestral sugar-detection pathways despite hematophagy lifestyle. We further found no evidence of the canonical insect CO2-associated GRs, suggesting alternative molecular mechanisms for CO2 perception in Triatominae. Several receptors, including Orco, also displayed shifts in selective constraints between sylvatic and domiciliary species, consistent with sensory remodeling associated with adaptation to domestic habitats. Together, our results identify ORs as the most evolutionarily dynamic component of the Rhodnius chemosensory repertoire and highlight contrasting evolutionary trajectories among chemosensory gene families during ecological diversification and vector adaptation.

evolutionary biology↗

bioRxiv2026

Genotype-by-diet interactions determine Black Soldier Fly life-history traits

The black soldier fly, Hermetia illucens, is increasingly valued in applied entomology due to its remarkable capacity to upcycle organic waste and for high nutritional value of its larvae. As a result of global expansion and domestication, the species now displays substantial genetic diversity, yet performance differences between strains remain poorly documented. This study aimed to better understand the relationship between genotype and phenotype, as well as their interaction, to support the improvement of its domestication. Five distinct strains collected from the wild by artisanal farmers or obtained from industrial farms were genetically characterized using whole genome sequencing. These analyses revealed high genetic divergence based on mitochondrial genome and SNP nuclear genome phylogeny. To assess phenotypic performance, the strains were reared on three diets differing in nutritional value: poor (alfalfa meal), intermediate (wheat bran) and rich (chicken feed) and their growth rate was assessed. At harvest, we evaluated different life history traits including survival rate, average larval mass, feed conversion ratio, substrate reduction and bioconversion rate. Statistical analyses revealed strong effects of both diet and strain (p < 0.001), but the key result was the pronounced strain x diet interaction. Performance varied drastically depending on substrate quality: some strains showed high versatility across all diets, while others performed mainly on nutrient-rich substrates or excelled in substrate degradation. In contrast, other strains displayed more specialized profiles, with marked sensitivity to fibrous diets. These contrasted reaction norms highlight that diet performance cannot be interpreted independently of the strain genetics. Overall, these findings underscore the value of preserving diverse local genetic resources and the need for improved molecular tools to guide strain selection. ImplicationThis study shows that performance of the black soldier fly depends strongly on interactions between genetic background and diet, confirming the importance of genotype-environment relationships. While results are based on a limited number of strains and substrates, the consistent strain x diet interaction suggests broader relevance for rearing systems. These findings highlight the need to integrate genomic data into phenotypic assessments. Practically, they indicate that strain selection should be tailored to substrate type to optimize productivity and efficiency. This has direct economic benefits for insect farming and waste management industries because improved strain-diet matching can enhance organic waste bioconversion and support circular economy strategies. Overall, preserving genetic diversity and developing molecular tools for strain selection are key steps toward more sustainable and efficient insect production systems of this study have implications for the development and sustainable BSF systems production.

zoology↗

bioRxiv2026

Metagenomic Analyses Reveal a Constrained Network of Nutritional Symbionts in Kissing Bugs

Triatominae bugs are the main vectors of Chagas disease in Latin America and rely on microbial nutritional symbiosis to complement their haematophagous diet with B-vitamins. While Rhodococcus bacteria have been identified as key symbionts, diverse metabarcoding analyses have suggested additional candidates. However, symbiont genomic data and metabolic capabilities remain largely uncharacterized. To address this gap, we generated metagenomic assemblies for 14 Triatominae and captured 15 bacterial genomes belonging to 4 genera (Rhodococcus, Wolbachia, Symbiopectobacterium and Arsenophonus) across 9 triatominae species. We identified five co-infection cases, including one involving two distinct Arsenophonus symbionts, one exhibiting hallmarks of massive genome degradation. Phylogenetic analyses revealed that Triatominae-associated symbionts form monophyletic groups within each genus, suggesting common origins followed by co-evolution with their hosts. Annotation of vitamin B metabolic genes indicates that most symbionts harbour incomplete pathways, with evidence of metabolic complementation between co-infecting symbionts. Additionally, we identified bacterial genes laterally transferred into host insect genomes, interpreted as footprints of present or past symbiotic associations. Nearly all Triatominae genomes displayed transferred genes from all four bacterial genera, including hosts with no detectable symbiont in genome assemblies. Taken together with these discoveries support the existence of a stable and limited network of four possible nutritional symbiont lineages with rare evidence of symbiont turn-overs. Significance statementTriatominae bugs, vectors of Chagas disease, are known to harbor a diverse community of nutritional bacterial symbionts whose genomic and metabolic roles have remained largely unexplored. By reconstructing 15 symbiont genomes that segregate as four bacterial genera, we provide important insight into the origins, the evolution and the metabolic structure of the nutritional symbiosis in triatominae. These findings support a stable, evolutionary conserved network of nutritional symbionts with limited turnover.

evolutionary biology↗

bioRxiv2025

The Hidden Sweet Tooth of the Black Soldier Fly (Hermetia illucens)

The black soldier fly Hermetia illucens (BSF) is increasingly studied for its ability to convert organic waste into protein, offering solutions for waste valorisation and livestock feeding. While egg production depends on adult performance, the biology of adult BSF remains poorly understood. In particular, growing evidence suggests that adults can feed and benefit from sugar supplementation but the behavioural and molecular bases of sugar detection remain unknown. To fill this gap, we tested whether adult BSF can detect and prefer sugar by using behavioural assays, binary-choice feeding tests and proboscis extension responses. We also described numerous gustatory sensilla on the proboscis with scanning electron microscopy, and characterized the responses to sugar in some of them with electrophysiological recordings. These experiments were complemented by an analysis of the gustatory receptor (GR) gene repertoire and the expression levels of sugar-responsive receptors. All the experimental tests conducted in this study converge to show that the adults can detect and consume sucrose, with females responding more strongly than males. Genome analysis identified 28 GRs, a surprisingly small number for a generalist fly, including only three putative sugar-specific GRs homologous to those of the eight known sugar GRs in Drosophila. Moreover, one of these GRs show a general high level of expression including in the head and in the antennae whereas the two others display tissue-specific patterns of expression. We also identify a high number of GR pseudogenes, including four putative sugar receptor pseudogenes, indicating multiple gene loss events and substantial reduction of the GR repertoire compared to other dipteras sharing a similar ecological niche. We conclude that although BSF possesses a reduced set of GR genes, including only three putative sugar-responsive GRs, adults have retained a strong sensitivity to sugars in their environment. The set of behavioural, morphological, and electrophysiological tools developed here provides a foundation for deeper investigations into feeding behaviour in this species of growing agroecological importance.

animal behavior and cognition↗

bioRxiv2024

Size-dependent temporal decoupling of morphogenesis and transcriptional programs in gastruloids

Understanding the interplay between cell fate specification and morphogenetic changes remains a central challenge in developmental biology. Gastruloids, self-organizing stem cell-based models of post-implantation mammalian development, provide a powerful platform to address this question. Here, we show that physical parameters, particularly system size, critically influence the timing and outcomes of morphogenetic processes. Larger gastruloids exhibit delayed symmetry breaking, increased multipolarity, and prolonged axial elongation, with morphogenesis driven by system size. Despite these variations, transcriptional programs and cell fate composition remain remarkably stable across a broad size range. Notably, extreme sizes show distinct transcriptional modules and clear shifts in gene expression patterns. Intriguingly, size perturbation experiments rescued the morphogenetic and pattern phenotypes observed in extreme sizes, demonstrating the remarkable adaptability of gastruloids to their effective system size. These findings establish gastruloids as versatile models for studying spatiotemporal dynamics in mammalian embryogenesis and reveal how physical constraints decouple transcriptional from morphogenetic programs.

developmental biology↗

bioRxiv2023

Hematophagous triatomine bugs feed also on plants and express functional amylase

BACKGROUNDBlood feeding is a secondary adaptation in hematophagous bugs that ancestrally feed on plants. Many vector proteins are devoted to cope with the hosts defenses and to process the blood meal. In contrast, one can expect that some digestive enzymes devoted to phytophagous diet were lost during or after this peculiar adaptation. And yet, in many strictly hematophagous arthropods, alpha-amylases genes, coding the enzymes that digest starch from plants, are still present and transcribed, including in the blood-sucking bug Rhodnius prolixus and its related species R. robustus (Hemiptera, Reduviidae, Triatominae). Triatominae bugs are vectors of Trypanosoma cruzi, the causal agent of Chagasdisease. Besides the parasitic human infection by the vector-borne route via an exposition to infected feces, an oral route is documented by the ingestion of contaminated food or juices made from palm fruit trees. METHODOLOGY/PRINCIPAL FINDINGSWe hypothesized that retaining alpha-amylase could be advantageous if the bugs happen to consume occasionally plant tissues. To this end, we surveyed hundreds of gut DNA extracts from the sylvatic species R. robustus caught on palm trees to detect traces of plant meals. We found plant DNA in over 8 % of the R. robustus samples, mostly the palm tree Attalea speciosa. Moreover, we showed that the R. robustus alpha-amylase retained normal amylolytic activity. CONCLUSIONSPreserving alpha-amylase function could be an important way of optimally harness plant substrates, and plant feeding could be a way for bridging the gap between two blood meals. Our data indicate that plants are a common and yet underestimated food source in the wild for Triatomine. Author SummaryAdaptation to a specific diet is often accompanied by metabolic, behavioral, physiological changes and hence by genetic changes like gene family expansion, gene losses or gains. In blood-sucking insects some adaptive features such as salivary components acting against blood clotting are known. However, it is intriguing that a digestive enzyme, alpha-amylase, which digests starch, is conserved in those animals, because blood does not contain starch nor related glucose polymers. This is the case in the blood-sucking bugs of the Rhodnius genus (Hemiptera, Reduviidae), which are vectors of the Chagasdisease, an important health issue in Latin America. In this study, we evidence for the first time that sylvatic bugs R. robustus also consume plant tissues in the wild. We detected by PCR performed on DNA from digestive tract that a significant number of wild-caught individuals harbored plant DNA, especially from Attalea palm trees, on which they used to nest. We showed that the amylase enzyme is normally active on starch. We suggest plant feeding could be a way for bridging the gap between two blood meals but might not be linked to nutritional distress.

ecology↗