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Biology subjects

McCormack, L.

Publications and source records attributed to McCormack, L..

3 recordsLinked to original sources

Embracing fine-root system complexity to improve the predictive understanding of ecosystem functioning

Projecting the functioning of the biosphere requires a holistic consideration of whole-ecosystem processes. Although improving leaf and canopy processes has been the focus of ecosystem model development since the 1970s, the arbitrary homogenization of fine-root systems into a single pool is at odds with observations. This discrepancy has increased in the last two decades as accelerated conceptual and empirical advances have revealed functional differentiation and cooperation conferred by the hierarchical structure of fine-root orders and associations with mycorrhizal fungi in fine-root systems. To close this model-data gap, we propose a 3-pool structure comprising Transport and Absorptive fine roots with Mycorrhizal fungi (TAM) to model vertically resolved fine-root systems across organizational and spatial-temporal scales. A comparison of TAM to the single fine-root structure in a state-of-the-art Earth System Model using the big-leaf approach demonstrates robust impacts on carbon cycling in temperate forests, lending further quantitative support to the empirical and theoretical basis for TAM. Strong support in both theory and practice therefore suggests a move beyond the useful but incorrect paradigm of single-pool homogenization, echoing a broad trend of embracing ecological complexities in terrestrial ecosystem modelling. Although challenges lay ahead towards realizing TAM in ecologically realistic demography models simulating emergent functioning from pattern and diversity, adoption of TAM by both modelers and empiricists holds promise to build a better predictive understanding of ecosystem functioning in the context of global change.

ecology↗

A continental scale analysis reveals widespread root bimodality

Summary paragraphRecent studies of plant fine roots have greatly advanced our understanding of their geometric properties and symbiotic relationships, but knowledge of how these roots are spatially distributed across the soil matrix lags far behind. An improved understanding of broad-scale variability in root vertical distribution is critical for understanding plant-soil-atmosphere interactions and their influence on the land carbon sink. Here we analyze a continental-scale dataset of plant roots reaching 2-meters depth, spanning 19 ecoclimatic domains ranging from Alaskan tundra to Puerto Rican neotropical forest. Contrary to the common expectation that fine root abundance decays exponentially with increasing soil depth, we found surprising root bimodality at ~20% of 44 field sites --a secondary peak of fine root biomass far beneath the soil surface. All of the secondary root peaks were observed deeper than 60cm (with 33% below 1m), far deeper than the sampling depth commonly used in ecosystem studies and forestry surveys. We demonstrate that root bimodality is more likely in places with relatively low total fine root biomass, and is more frequently associated with shrubland vegetation but less with grassland. Further statistical analyses revealed that the secondary peak of root biomass coincided with unexpected high soil nitrogen contents at depth. By linking roots and nutrient distributions, we further demonstrate that deep soil nutrients tend to be underexploited by plant rooting systems, yet root bimodality offers a unique mechanism by which fine roots can tap into soil resources in the deep. Our findings suggest that empirical practices have often systematically overlooked root dynamics in deep soils, and as a result the current-generation global climate and vegetation models have relied on overly simplistic assumptions for plant rooting distribution.

ecology↗

PGP-UK: a research and citizen science hybrid project in support of personalized medicine

Molecular analyses such as whole-genome sequencing have become routine and are expected to be transformational for future healthcare and lifestyle decisions. Population-wide implementation of such analyses is, however, not without challenges, and multiple studies are ongoing to identify what these are and explore how they can be addressed. Defined as a research project, the Personal Genome Project UK (PGP-UK) is part of the global PGP network and focuses on open data sharing and citizen science to advance and accelerate personalized genomics and medicine. Here we report our findings on using an open consent recruitment protocol, active participant involvement, open access release of personal genome, methylome and transcriptome data and associated analyses, including 47 new variants predicted to affect gene function and innovative reports based on the analysis of genetic and epigenetic variants. For this pilot study, we recruited ten participants willing to actively engage as citizen scientists with the project. In addition, we introduce Genome Donation as a novel mechanism for openly sharing previously restricted data and discuss the first three donations received. Lastly, we present GenoME, a free, open-source educational app suitable for the lay public to allow exploration of personal genomes. Our findings demonstrate that citizen science-based approaches like PGP-UK have an important role to play in the public awareness, acceptance and implementation of genomics and personalized medicine.

genomics↗