Biology subjects

Massot, M.

Publications and source records attributed to Massot, M..

5 recordsLinked to original sources

bioRxiv2026

The attachment rate of Vibrio anguillarum strains to microplastics strongly varies with abiotic and biotic factors

Microplastics (MPs), resulting from plastic objects and waste degradation, are increasingly abundant, particularly in marine environments. They exhibit a hydrophobic surface on which biofilms form easily. Metagenomic analyses of these biofilms have revealed that they often contain bacterial species potentially pathogenic to humans or animals. For this reason, MPs are suspected to present a risk for public health by acting as a vector for pathogenic bacteria species. To better understand this hazard, we studied different factors potentially affecting the bacterial attachment rate to MPs. Focusing on the fish pathogen Vibrio anguillarum, a collection of 16 strains was assembled and GFP-labelled. Their attachment rates were measured using fluorescence microscopy on three types of MPs (milled polypropylene and polyethylene terephthalate particles and commercially available polystyrene beads). A strong effect of the particle type was found, likely linked to both the chemical composition of the particles and the surface characteristics, with higher attachment rates on rough particles. Our results also revealed a strong intra-specific variation in attachment rate, highlighting the need of testing several strains of the same species to assess attachment rate and related hazards. Finally, it was observed that when a biofilm already formed on the MPs (by field-incubation of the MPs along the Mediterranean French coast), differences in attachment rates between particle types were erased. It was concluded that the attachment rate of V. anguillarum depends on a combination of biotic and abiotic factors, which makes risk assessment of MPs as vectors of pathogenic bacteria species a very complex task.

microbiology↗

bioRxiv2025

Quantitative genetics of lifetime growth curves in a lizard

Body size is an iconic trait in quantitative genetics. For species with indeterminate growth however, growth curve, a function-valued trait, is the actual trait of interest and requires a specialised framework to study its quantitative genetics. Here, we use such a framework in the common lizard (Zootoca vivipara), using two large datasets (wild and mesocosm populations) with pedigrees, decomposing the total heritability in growth dynamics into two components: the heritability of "intrinsic size" (being small or large across ages) and the heritability of the shape of growth curve. We found slower growth and larger asymptotic sizes in the wild population. We show very low to moderate heritabilities in the parameters of growth curves, varying across populations and sexes. We show a small to moderate heritability in the growth curves, with a stronger importance of the heritability in the shape of growth curves than on average intrinsic sizes. Genetic variation in growth curves differed between the two populations and sexes. Our results highlight the importance of discussing the full dynamics of growth by showing that there is more adaptive potential in the earlier ages for males and in the later ages for females, with differences between the studied populations.

evolutionary biology↗

bioRxiv2022

NGS data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

The fungal pathogen Zymoseptoria tritici is the causal agent of Septoria tritici blotch (STB), a major wheat disease in Western Europe. Microorganisms inhabiting wheat leaves might act as beneficial, biocontrol or facilitating agents that could limit or stimulate the development of Z. tritici. Improving our understanding of microbial communities in the wheat phyllosphere would lead to new insights into STB management. This resource announcement provides fungal and bacterial metabarcoding datasets obtained by sampling wheat leaves differing in the presence of symptoms caused by Z. tritici. Tissues were sampled from three wheat commercial varieties on three sampling dates during a cropping season. Weeds around wheat fields were sampled as well. In total, more than 450 leaf samples were collected. The pathogen Z. tritici was quantified using qPCR. We provide the raw metabarcoding datasets, the Amplicon Sequence Variant (ASV) tables obtained after bioinformatic processing, the metadata associated to each sample (sampling date, wheat variety and tissue health condition), a preliminary descriptive analysis of the data, and the code used for bioinformatic and descriptive statistical analysis.

microbiology↗

bioRxiv2021

Interplay between bacterial clone and plasmid in the spread of antibiotic resistance genes in the gut: lessons from a temporal study in veal calves

Intestinal carriage of extended spectrum {beta}-lactamase (ESBL)-producing Escherichia coli is a frequent, increasing and worrying phenomenon, but little is known about the molecular scenario and the evolutionary forces at play. We screened 45 veal calves, known to have high prevalence of carriage, for ESBL-producing E. coli on 514 rectal swabs (one randomly selected colony per sample) collected over six months. We characterized the bacterial clones and plasmids carrying blaESBL genes with a combination of genotyping methods, whole genome sequencing and conjugation assays. One hundred and seventy-three ESBL-producing E. coli isolates [blaCTX-M-1 (64.7%), blaCTX-M-14 (33.5%) or blaCTX-M-15 (1.8%)] were detected, belonging to 32 bacterial clones, mostly of phylogroup A. Calves were colonized successively by different clones with a trend in decreasing carriage. The persistence of a clone in a farm was significantly associated with the number of calves colonized. Despite a high diversity of E. coli clones and blaCTX-M-carrying plasmids, few blaCTX-M gene/plasmid/chromosomal background combinations dominated, due to (i) efficient colonization of bacterial clones and/or (ii) successful plasmid spread in various bacterial clones. The scenario clone vs. plasmid spread depended on the farm. Thus, epistatic interactions between resistance genes, plasmids and bacterial clones contribute to optimize fitness in specific environments.

microbiology↗

bioRxiv2020

Microbial association networks give relevant insights into plant pathobiomes

Interactions between plant pathogens and other plant-associated microorganisms regulate disease. Deciphering the networks formed by these interactions, termed pathobiomes, is crucial to disease management. Our aim was to investigate whether microbial association networks inferred from metabarcoding data give relevant insights into pathobiomes, by testing whether inferred associations contain signals of ecological interactions. We used Poisson Lognormal Models to construct microbial association networks from metabarcoding data and then investigated whether some of these associations corresponded to interactions measurable in co-cultures or known in the literature, by using grapevine (Vitis vinifera) and the fungal pathogen causing powdery mildew (Erysiphe necator) as a model system. Our model suggested that the pathogen species was associated with 23 other fungal species, forming its putative pathobiome. These associations were not known as interactions in the literature, but one of them was confirmed by our co-culture experiments. The yeast Buckleyzyma aurantiaca impeded pathogen growth and reproduction, in line with the negative association found in the microbial network. Co-cultures also supported another association involving two yeast species. Together, these findings indicate that microbial networks can provide plausible hypotheses of ecological interactions that could be used to develop microbiome-based strategies for crop protection.

ecology↗