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Biology subjects

Martinez, J. F.

Publications and source records attributed to Martinez, J. F..

3 recordsLinked to original sources

Resolution of collided ribosomes by ZNF598 is required for adipocyte energy dissipation

Cellular adaptation to stress evoked by high energy demand requires tight coordination between transcriptional programs, protein synthesis, and organelle function. In many physiological contexts, metabolic remodeling depends on increased mitochondrial capacity and activity, placing high demands on the translational machinery. Beige and brown adipocytes, which undergo rapid mitochondrial expansion and activation in response to physiological cues, provide a powerful model to study how cells adapt their translational output to meet increased metabolic demand. How translational fidelity is maintained, and stress-associated conflicts in protein synthesis are resolved during such adaptive processes, remains incompletely understood. Here, we identify ZNF598 as a key factor that resolves translation stress caused by ribosome collisions during metabolic adaptation of adipocytes. We show that diverse physiological stimuli, including hormonal signaling, environmental challenges, and dietary changes, induce ZNF598 and associated enzymes in metabolically active cells. ZNF598 is required for efficient mitochondrial biogenesis and function, supporting adaptive increases in respiration and energy expenditure. Loss of ZNF598 compromises these adaptive responses and leads to metabolic dysfunction, whereas enhancement of ZNF598 activity improves cellular and organismal metabolic flexibility. Together, these findings indicate that distal steps of the translational machinery are a rate-limiting factor for adaptation to increased energy demand.

cell biology↗

ZAKα is a sensor of mRNA stasis at the ribosomal exit channel

Despite a growing interest in the ribotoxic stress response (RSR), it remains unknown how the upstream p38 and JNK-activating MAP3 kinase ZAK senses translational impairment. Combining Alphafold3 prediction and RNA crosslinking and immunoprecipitation (CLIP), we uncover that ZAK dynamically monitors the mRNA exit channel of elongating ribosomes for mRNA stasis. This is accomplished by ZAK via its direct interactions with the ribosomal proteins RACK1 and RPS27 as well as with the 18S rRNA helix-26. In this conformation, four mRNA-binding peptides in ZAK span across the path of ribosome-exiting mRNA. Progressive elongation effectively threads ZAK off the ribosome, while mRNA stasis stabilizes the interaction allowing for kinase activation. Prolonged binding of ZAK to slow-elongating, stalled and collided ribosomes is associated with sequestration of the inhibitory SAM domain on RACK1, allowing for transient ZAK dimerization, activation loop trans-autophosphorylation and RSR activation. We propose that compromised ribosome processivity constitutes a common ribotoxic stress signal and that ZAK is a ribosome collision-agnostic sensor of such perturbations.

molecular biology↗

Rhizosphere metagenomics of mine tailings colonizing plants: assembling and selecting synthetic bacterial communities to enhance in situ bioremediation

Mine tailings phytostabilization has been proposed as a bioremediation strategy to constrain the contaminants dispersion using plants to limit the effects of erosion. Rhizospheric bacteria impact plant health and facilitate plant establishment through their metabolic functions, which could be relevant in bioremediation strategies. We studied both culturable and metagenomic diversity or rhizospheric bacteria of mine tailings colonizing plants of an abandoned mine operation in Nacozari de Garcia, Sonora, Mexico. Diversity was described through amplification of the 16S rRNA gene and whole metagenome shotgun sequencing of both environmental and cultured rhizosphere associated microbes. The culturable bacteria were assembled in a synthetic community (SC; 235 bacteria genera). Subsequently, we performed an experimental evolution setup with the SC, selecting for heavy metal resistance, microbial competition, and the ability for growing in plant-derived nutrient sources. The selection experiment show that bacteria diversity decreases from the environmental culture-free microbiomes to the mine tailings rhizospheres and the experimental evolution outcome: the synthetic community (FSC; 43 bacteria genera). The rhizosphere communities shifted from the dominance of Actinobacteria in their environment to Proteobacteria in the cultivated consortia and the synthetic communities. Both environmental and cultured metagenomes contained plant-growth promotion, heavy-metal homeostasis, and antibiotic resistance predicted genes. The FSC included predicted proteins related to plant-growth promotion such as siderophore production and plant hormone regulation proteins. We reconstructed a metagenome assembled genomic sequence named Enterobacter sp., Nacozari. The recovered Enterobacter sp. Nacozari, have predicted coding genes for direct and indirect plant growth promotion along with adhesion and oxidative stress-related proteins. The metabolic potential of the FSC presents promising features that might make it useful for plant-growth promotion in tailored phytostabilization strategies for the abandoned mine-tailings of Nacozari.

genomics↗