Biology subjects

Martinez, A.

Publications and source records attributed to Martinez, A..

At least 19 recordsLinked to original sources

bioRxiv2026

Spatiotemporal profiling of T cell repertoires in Lynch syndrome reveals convergent immune responses through neoplastic progression

Surveillance of individuals with Lynch syndrome (LS), who are carriers of heterozygous inactivating mismatch repair (MMR) gene mutations that predispose to colorectal cancer, enables the study of tumour-immune coevolution during tumour initiation. Somatic loss of MMR activity in the LS colon leads to the accrual of cancer driver mutations, and also of neoantigens likely to generate an adaptive immune response. However, the spatial and temporal immune dynamics in colon and peripheral blood are uncharacterised. Here we show that the neoplastic evolution of mismatch repair deficient (MMRd) clones leads to large-scale and sustained reorganisation of the T-cell repertoire in colon and peripheral blood. We performed dense spatiotemporal profiling of T cell receptor (TCR) repertoires from 109 colonic biopsies (11 tumour samples, 98 normal bowel) from seven individuals, with eight matched blood repertoires. We additionally analysed 13 colorectal polyp repertoires from eight participants, 286 cross sectional blood repertoires from 242 participants (198 LS and 44 non-LS) and 52 longitudinal peripheral blood samples from 26 individuals with LS. We detected tumour-associated T cell clones, some of which were widely present in normal bowel tissue and also detectable in peripheral blood. Sequence similarity analysis revealed conserved TCR architectures across tissue compartments and recurrent clustering patterns between patients, that were not present in non-Lynch controls, consistent with convergent MMRd-associated antigen-driven immune selection. We identified systemic signatures associated with local tumour immune activity and revealed evidence of structured repertoire remodelling before overt malignancy. Longitudinal profiling revealed frequent turnover of low-abundance clonotypes, whereas highly abundant clonotypes persisted for several years. Collectively, our data defines the local and circulating TCR landscape associated with colonic neoplasia in LS, and provides a framework for LS blood-based immune monitoring, early interception and biomarker development.

immunology↗

bioRxiv2026

Ecological coupling of foraging and thermoregulation in harvester ants from a tropical deciduous forest in southern Mexico

Diurnal ectotherms in hot and dry ecosystems face an acquisition trade-off between maximizing collective energy intake and minimizing individual exposure time. We employed optimal foraging and thermoregulation models to examine the surface foraging and thermoregulatory strategies of Pogonomyrmex barbatus foragers in response to habitat warming in a tropical deciduous forest. Foraging activity was evaluated using field-based thermal performance curves (fTPCs) for individual foraging speed and collective foraging success. Thermoregulation was assessed through indices of thermal unsuitability, as well as thermoregulatory effectiveness and exploitation. Our results show that afternoon conditions were significantly hotter and drier than those in the morning. Furthermore, the decoupling of fTPCs was dynamic; while the optimal temperature (Topt) for individual foraging speed remained stable at 44 degrees C, the Topt for collective foraging success shifted from 35 degrees C in the morning to 41 degrees C in the afternoon. This shift in foraging strategy, driven by stressful afternoon conditions, was reflected in a transition of the thermoregulatory strategy. Specifically, the probability of foraging activity decreased as thermal unsuitability increased, with a lower baseline in the afternoon. The thermoregulatory exploitation dropped from 94% in the morning to 63% in the afternoon. Based on thermoregulatory effectiveness, foragers transitioned from an active thermoregulatory strategy in the morning to a thermoconformist strategy in the afternoon while foraging on the surface. So, the observed colonies optimized the balance between individual foraging speed and collective foraging success through a thermoregulatory strategy that was primarily spatial in the morning and strictly temporal in the afternoon. A comparison with historical data from the same site reveals a 40% contraction in the total daily foraging window since 2013.

ecology↗

bioRxiv2026

PKA disrupts adult ovarian identity circuits through direct inhibition of TRIM28-chromatin binding

Functional ovarian plasticity depends on the granulosa cell (GC) fate determination, differentiation, oocyte support and steroid production. After birth, GC identity must be maintained in differentiating follicles, while from puberty, ovarian plasticity is cyclically challenged by gonadotropic hormones. TRIM28-FOXL2 interactions form a key chromatin component maintaining ovarian identity programs and repressing testis-specific genes. This TRIM28 role depends on its E3-SUMO-ligase activity, suggesting SUMOylation in GC can be regulated by transient hormonal cues, although hormonal involvement in modulating GC identity remains to be established. Here, we demonstrated the in vivo interplay between gonadotropic-PKA-signaling and hypo-SUMOylation waves underlying ovarian GC plasticity. In vitro TRIM28 mutagenesis and phospho-proteomics demonstrated direct PKA inhibitory control on TRIM28. This prompted us to highlight SUMOylation alterations in Carney Complex ovarian lesions resulting from chronic PKA activity from rare genetic mutations. Using mutant models, transcriptomics and TRIM28/FOXL2-ChIP-Seq analyses, we specified the in vivo PKA inhibitory mechanisms on TRIM28/FOXL2 chromatin binding and its consequences on adult ovarian somatic cell identity. Together, our data support an integrative model where gonadotrophin pulses create transient windows of PKA-mediated TRIM28 phosphorylation, hypo-SUMOylation, and FOXL2-TRIM28 destabilization. This positions SUMOylation dynamics as central integrator of hormonal signaling and epigenetic identity maintenance in the ovary.

physiology↗

bioRxiv2026

Multiscale Network Disruption of Auditory-Language Circuits Underlying Auditory Hallucinations in Schizophrenia

Background: Auditory verbal hallucinations (AVH) are among the most disabling symptoms of schizophrenia, yet the network-level mechanisms linking auditory dysfunction to hallucination severity remain poorly characterized, limiting targeted therapeutic development. Methods: Using resting-state fMRI and high-resolution surface-based parcellation (HCP-MMP), we examined auditory-language functional connectivity and mesoscale network organization in 56 patients with schizophrenia and 22 healthy controls (primary dataset, N=78). Pairwise auditory-language connectivity associations with hallucination severity (PANSS P3) were examined alongside auditory network community structure, assortativity, hub organization, and routing efficiency. To further characterize these parcel-level findings at the vertex level, we applied a region-growing approach to identify auditory-frontal connectivity patterns maximally associated with severity. In silico perturbation analyses tested the causal role of belt cortex connectivity. Key findings were independently replicated in 93 patients from the Human Connectome Project for Early Psychosis (HCP-EP), for a combined total of 171 participants. Results: Auditory-language connectivity disruptions were concentrated in belt cortex and specifically implicated ventral what-stream connections, with a vertex-wise analysis converging on the same anatomy. Auditory network segregation scaled with hallucination severity, with belt cortex emerging as the primary integrative hub governing auditory-to-language routing efficiency. Perturbation analyses showed that strengthening earlier hierarchy auditory regions reduced network segregation more than strengthening later-hierarchy regions. Reduced belt cortex coupling and elevated network segregation replicated independently in the HCP-EP sample. Conclusions: Auditory network disorganization scales with hallucination severity and replicates across independent samples, with belt cortex as the critical locus of connectivity disruption and network integration failure, identifying it as a candidate neuromodulatory target.

neuroscience↗

bioRxiv2026

Dysregulation of the SARA-Smurf2 Regulatory Axis in Temporal Lobe Epilepsy

Temporal lobe epilepsy (TLE) is associated with dysregulation of transforming growth factor {beta} (TGF{beta}) signaling, a key contributor to epileptogenesis. SARA (Smad Anchor for Receptor Activation), a central regulator of this pathway, is controlled by the E3 ubiquitin ligase Smurf2 through ubiquitination. However, the role of the SARA-Smurf2 axis in regulating TGF{beta} signaling during TLE has not previously been described, and whether this pathway can be therapeutically targeted remains unknown. Using a pilocarpine-induced status epilepticus (SE) model and astrocytes derived from patients with refractory TLE, we identified dysregulation of the SARA-Smurf2 pathway in both experimental systems. In SE rats, SARA and Glial Fibrillary Acidic Protein (GFAP) levels were significantly increased, whereas Smurf2 induction was insufficient to prevent SARA accumulation. In TLE-derived astrocytes, increased SARA and GFAP immunoreactivity was accompanied by reduced Smurf2 immunoreactivity and altered Smurf2 subcellular distribution. Losartan treatment restored SARA and Smurf2 immunoreactivity toward a control-like pattern in both models and reduced seizure frequency and duration in SE animals. These findings point towards a dysregulation of the SARA-Smurf2 axis as a molecular signature of TLE, support SARA as a potential therapeutic target, providing experimental evidence for the repositioning of Losartan as a potential treatment alternative for drug-resistant epilepsy, warranting further translational and clinical investigation. KEY POINTSO_LIDysregulation of the SARA-Smurf2 axis is a molecular signature of experimental and human temporal lobe epilepsy. C_LIO_LIImpaired Smurf2-dependent regulation of SARA may sustain TGF{beta} signaling, astrocyte reactivity, and epileptogenesis. C_LIO_LILosartan restores the SARA-Smurf2 axis and reduces seizures, supporting a novel therapeutic strategy for TLE. C_LI

neuroscience↗

bioRxiv2026

Dopamine projections to the basolateral amygdala enable reward prediction

Reward predictions are critical to both adaptive learning and decision making. Such predictions are supported by environmental cues that signal the availability and identity of rewarding events. Here we used fiber photometry, cell-type and pathway-specific optogenetic inhibition, Pavlovian cue-reward conditioning, and decision-making tests in male and female rats to reveal that ventral tegmental area dopamine (VTADA) projections to the basolateral amygdala (BLA) support cue-reward predictions. Reward-predictive cues trigger dopamine release in the BLA that encodes the value of the predicted reward. This cue-evoked VTADA[->]BLA activity mediates the ability of cue-reward predictions to bias action selection and adapt cue-response decisions based on the current value of the predicted reward. Cue-evoked VTADA[->]BLA activity also mediates the constraining influence of cue-reward predictions on new learning. Thus, cue-evoked BLA dopamine supports the reward predictions that both enable adaptive decision making and constrain learning.

neuroscience↗

bioRxiv2026

Meiofaunal communities flourish in Antarctic marine sediments despite the harsh environmental conditions

While Antarctic terrestrial ecosystems support low metazoan diversity, the surrounding marine macrobenthos is rich. However, marine meiofauna remains historically neglected, leaving its diversity patterns unclear. In this study, we used 18S rRNA gene metabarcoding alongside an enhanced taxonomic annotation pipeline to characterize marine meiofauna diversity in the Ross Sea, comparing it to global datasets. We evaluated how depth, habitat type, and mesh size influence community structures to test if habitat heterogeneity drives diversity despite the harsh Southern Ocean conditions. Our results revealed exceptionally high diversity, with metazoans richness comparable to or higher than temperate regions. Although environmental variables had limited effects on taxonomic richness, they significantly shaped community composition, with habitat type explaining the highest proportion of variance. Interestingly, we detected several ASVs 100% identical to North Sea and North Atlantic sequences, likely reflecting the limited taxonomic resolution of the 18S marker rather than global dispersal (the "meiofaunal paradox"). Overall, these findings demonstrate that Antarctic marine sediments host rich meiofaunal communities where ecological processes operate similarly to other global regions, contrasting sharply with depauperate continental Antarctic ecosystems.

ecology↗

bioRxiv2026

TET2-driven activation of AGO2 links epigenetic remodeling to myeloid commitment and leukemia

DNA methylation dynamics shape hematopoietic differentiation and leukemogenesis; yet how the dioxygenase TET2--frequently mutated in myeloid malignancies--directs lineage-specific regulatory programs remains unclear. Here, we integrated DNA methylation, chromatin accessibility, 3D genome architecture, transcriptional profiling, and TET2 chromatin occupancy to define TET2-dependent control of human myeloid commitment. We found that TET2-bound regulatory regions gain short- and long-range chromatin interactions and that a distinct subset of distal, enhancer-enriched sites undergoes TET2-driven demethylation and activation. Among these, we identified an AGO2 myeloid-specific intragenic enhancer that is frequently hypermethylated in TET2-mutant AML patients. AGO2 expression stratifies patient survival, and AGO2 depletion abrogates leukemic engraftment in vivo. These findings uncover a TET2-AGO2 regulatory axis that integrates epigenetic remodeling, 3D genome reorganization, and leukemic fitness, and they highlight AGO2 as a potential biomarker and therapeutic target in myeloid leukemia.

genomics↗

bioRxiv2026

Centriolar satellites regulate CEP350 mRNA localization and centrosome amplification

Messenger RNAs (mRNAs) accumulate at centrosomes in mitosis and interphase, yet the mechanisms governing their localization and the functional significance of centrosomal localization remain poorly understood. Here, we investigate the regulation and function of the centrosome-localized mRNA, CEP350. We find that CEP350 mRNA localizes to centrosomes during S phase via the centriolar satellite protein CEP131 and the RNA binding protein (RBP) Unkempt (UNK), in a microtubule (MT)-dependent manner. CEP131 and UNK stabilize CEP350 mRNA to maintain CEP350 mRNA steady-state levels. Furthermore, CEP131 and UNK promote normal CEP350 protein levels at centrosomes. CEP350 is required for PLK4-induced centriole overduplication but is less important for canonical centriole duplication. Moreover, CEP131, UNK, and CEP350 are important for centrosome amplification in triple-negative breast cancer cells. Together, these findings reveal a centriolar satellite-RBP pathway regulating CEP350 mRNA localization to centrosomes. Significance StatementO_LImRNAs encoding centrosomal proteins localize to centrosomes during interphase, though the mechanism and functional significance of this localization remains unclear. C_LIO_LIThis study finds that the centriolar satellite proteins CEP131 and UNK regulate centrosomal localization of CEP350 mRNA and protein during S phase. C_LIO_LICEP131, UNK, and CEP350 are required for centrosome amplification in triple negative breast cancer cells - a dependency that identifies them as potential therapeutic targets. C_LI

cell biology↗

bioRxiv2026

Systemic neoantigen-specific T cells reveal central determinants of PD-(L)1 blockade efficacy

The contribution of neoantigen-specific T cells to PD-(L)1 efficacy has largely been inferred from tumor mutational burden. We functionally profiled circulating T cell responses against 7,038 predicted HLA-I-restricted and 21,453 HLA-II-restricted neopeptides in 27 patients with advanced non-small cell lung cancer treated with anti-PD-(L)1. CD4 responses were frequent and correlated with neoantigen availability but not clinical benefit. In contrast, the magnitude and breadth of neoantigen-specific CD8 T cell responses were associated with clinical benefit, progression-free and overall survival, independently of tumor mutational burden. Patients mounting coordinated CD4 and CD8 responses experienced improved progression-free survival. Tumors from CD8 responders displayed immune signatures indicative of both T cell priming and effector functions. Circulating neoantigen-specific CD8 T cells recognized endogenously processed antigens, trafficked to tumors, and selectively expanded under therapy while retaining CD28, CD226, and CXCR3 expression. These findings identify coordinated, functionally engaged neoantigen-specific T cell responses as central determinants of PD-(L)1 efficacy.

cancer biology↗

bioRxiv2026

Anaerobic methane oxidation by ANME-2a at two molar chloride in Orca Basin

Anaerobic methane oxidation, typically mediated by consortia of archaea and bacteria, is a key process in the global methane cycle, but little is known about its upper salinity limits. We characterized the microbial methane cycle in the anoxic, hypersaline Orca Basin using metagenomics, metatranscriptomics, fluorescence in situ hybridization, and geochemical measurements at sub-meter resolution. In the brine, we detected transcriptional activity of the halophilic methylotrophic methanogen Methanohalophilus, consistent with a biological source for Orca Basin methane. In the particle-rich halocline ([~]2 M Cl-; [~]2235 meters depth), high mcrA transcription by a novel ANME-2a species was co-located with a positive shift in {delta}13C-CH4 indicative of anaerobic oxidation of methane. ANME-2a also transcribed genes for biosynthesis of the osmolyte N({varepsilon})-acetyl-{beta}-L-lysine, supporting adaptation for hypersaline conditions. At the same depth, consortia of sarcina-like archaea, likely ANME-2a, were observed in association with vibrioid and filamentous bacteria, potentially members of a halotolerant genus in the order Desulfobulbales (family SURF-16, which includes the previously identified ANME partner Seep-DBB) that were active at the same depth. At and above the oxic-anoxic interface, aerobic methane oxidation appears to be mediated by three genera of uncultivated Methylococcales bacteria. Our results double the upper salinity range of ANME-2a to [~]2 M Cl- and reveal the key microbial players in the methane bio-filter between the Orca Basin brine and overlying seawater.

microbiology↗

bioRxiv2026

DISGENET: Accelerating Data-Driven Discovery in Disease Genomics and Therapeutic Development

Precision medicine and therapeutic development rely on a comprehensive understanding of genotype-phenotype relationships, yet this information remains fragmented across diverse sources. DISGENET, established over 15 years ago, addresses this challenge by systematically integrating gene-disease, variant-disease, and disease-disease associations from authoritative databases and the literature. This major upgrade expands coverage with chemical and pharmacological annotations and integrates biobank and clinical data. An advanced natural language processing (NLP) pipeline captures emerging evidence with full provenance and contextual details, key to streamlining data-driven insights. DISGENET supports diverse users through multiple tools, including an intuitive web interface, a REST API, an R package, a Cytoscape app, and an AI assistant for natural language queries. Quarterly updates ensure data currency, while a sustainable freemium model provides free academic access and supports ongoing development. DISGENET aims to accelerate data-driven discoveries and advance precision medicine and drug development. The platform is accessible at https://www.disgenet.com. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=80 SRC="FIGDIR/small/697749v1_ufig1.gif" ALT="Figure 1"> View larger version (33K): org.highwire.dtl.DTLVardef@1cf5b9aorg.highwire.dtl.DTLVardef@87004aorg.highwire.dtl.DTLVardef@1243b2borg.highwire.dtl.DTLVardef@1a8adab_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIDISGENET accelerates precision medicine via comprehensive genotype-phenotype data C_LIO_LIAccess to gene, variant, disease, and drug data in a single platform C_LIO_LIUp-to-date evidence with provenance and full context C_LIO_LISuite of tools to serve diverse research and clinical communities C_LIO_LISustainable freemium model ensures ongoing platform innovation. C_LI

bioinformatics↗

bioRxiv2025

Multilayered human activities shape the microbial communities of groundwater-dependent ecosystems in an arid oceanic island

Island coastal aquifers, though physically small compared to continental groundwater systems, are of huge ecological and societal importance, sustaining functions that connect to locally crucial provision, maintenance and culture ecosystem services. Those functions are largely dependent on the presence of highly adapted biological communities, for which, their microbial communities remain understudied. Our goal is to describe the bacterial communities across the groundwater-dependent ecosystems on Lanzarote, spanning a gradient of anthropogenic pollution using 16SrRNA amplicon sequencing. We sampled coastal caves and pools, wells and water galleries, springs, saltworks and marine bays affected by submarine groundwater discharge. Ecological analyses highlight that richness and composition of bacterial communities strongly depend on the type of habitats. Pathogens and human-derived species were ubiquitous in our samples, but, strikingly, caves and wells were strongly enriched with them compared to other habitats. We propose that our results highlight the susceptibility of groundwater environments to pollution and indicate that aquifers act as reservoirs of biological contamination in addition to natural diversity--regardless of their salinity. Since this enrichment might compromise some of the functions and services that groundwater-dependent ecosystems provide in oceanic islands, we call for integrative conservation strategies that include hydrological and biological perspectives into the decision making.

microbiology↗

bioRxiv2025

TRIP13 fosters both transcriptional silencing and DSB repair during meiosis

During meiosis, the coordinated suppression of global gene transcription and induction of double-strand breaks (DSBs) genome wide is crucial for successful gamete formation. The AAA+ ATPase TRIP13 is a master meiotic regulator involved in numerous cellular processes, including DSB repair, organization of the meiotic chromosome axis, and meiotic silencing of unsynapsed axes. Here, we examine the involvement of TRIP13 in transcription suppression and DSB repair during meiotic prophase I in mice. Because TRIP13 is required for silencing of sex chromosomes at pachynema, we hypothesized that it may also be involved in the global transcription suppression that begins at the onset of meiotic prophase. Indeed, as predicted, we observed increased incorporation of 5-ethynyl uridine in early stages of meiotic prophase I and a higher presence of the active form of RNA polymerase II in Trip13 mutant spermatocytes. RNA sequencing data revealed that more than two-thirds of upregulated transcripts came from the sex chromosomes. Given this more general role in transcription silencing, we also tested whether TRIP13 promotes the transcription block that causes meiotic arrest in synapsis-deficient oocytes. However, Trip13 ablation did not rescue Spo11-/- oocytes, which experience asynapsis without DSB repair defects. Instead, Trip13 mutation did increase the number of oocytes in Dmc1-/- Chk2-/- mice, in which DSBs persist unrepaired. This rescue seems attributable to a previously unknown function of TRIP13 in preventing DSB repair by non-canonical pathways, as we observed fewer homologous recombination markers along with an increased presence of non-homologous end joining markers in the triple mutant cells. These findings underscore TRIP13s multifaceted role in transcription and DSB repair regulation during meiosis, highlighting its importance and potential for further meiotic regulation and fertility research.

cell biology↗

bioRxiv2025

Convergent evolution of sensory palps in Scalibregmatidae (Annelida)

Scalibregmatidae are deposit feeders inhabiting muddy or sandy sea floors at considerable depths, and usually lack head appendages common in many other marine annelids. Surprisingly, one lineage within this family bears palp-like structures comparable to anterior head appendages in other Annelida. Nevertheless, a homology of the scalibregmatid appendages with those of other annelids is highly questionable. Using an integrative morphological approach including immunohistochemistry, azan-histology, and 3D reconstruction, we examined the neural innervation of the anterior head region in one travisiid and two scalibregmatid species: Travisia sp. (without appendages), Scalibregma celticum (lateral, prostomial horns), and Axiokebuita cavernicola (palp-like appendages). Scalibregma and Axiokebuita show an innervation pattern of their appendages different from that of palps in other annelids, while no prominent prostomial innervation is present in Travisia. The short, lateral horn-like appendages of S. celticum possess a quite diffuse neuronal scaffold extending from distinct neurite bundles originating from multiple regions of the brain. The elongated palp-like head appendages of A. cavernicola exhibit a neuronal innervation pattern comparable with that of thin sensory antennae known from other annelid groups. Thus, innervating neurites solely originate in the dorsal part of the brain, a pattern not observable for "true" feeding- or sensory palps of other taxa. We also shed new light on the mysterious "neck organ" in scalibregmatids, which are shown to be ventral dublications of the olfactory nuchal organs considering the level of external features and nervous innervation. These results, combined to previous phylogenetic studies, show that Scalibregmatidae are the only so far known annelids to have re-evolved palp-like sensory head structures after a secondary loss. Thus, this is the first example of convergent evolution of palps, a character complex hitherto showing similar overall innervation patterns and considered homologous across all annelids.

evolutionary biology↗

bioRxiv2025

Ovarian development is driven by early spatiotemporal priming of the coelomic epithelium

Ovarian organogenesis relies on the coordinated specification of supporting and steroidogenic lineages from multipotent coelomic epithelium (CE) progenitors. However, it remains unclear how ovarian cellular diversity arises and whether CE progenitors are fate-biased before or after ingression into the gonad. We show that CE cells in fetal mouse and human ovaries are transcriptionally heterogeneous and spatially organized into subdomains already primed toward supporting or steroidogenic identities. CE priming is dynamic, influenced by proximity to the mesonephros, with a transient coexistence of both progenitor types before resolution toward a predominantly supporting-biased CE. In mice, delamination of primed CE cells seeds intragonadal niches that generate pre-granulosa and steroidogenic progenitors. We further demonstrate that fetal steroidogenic progenitors give rise to adult stromal and theca cells, and that granulosa cells have a dual origin from CE-derived and supporting-like cells. Together, these findings reveal a conserved, spatially encoded program of ovarian lineage specification.

developmental biology↗

bioRxiv2025

Urbanisation reshapes community assembly differently across coastal beach and dune habitats

Urbanisation can reduce biodiversity through environmental filtering, but its effects may differ among neighbouring habitats within ecotones. Beach-dune systems provide a useful test because strong environmental gradients occur over short distances and overlap with gradients in human pressure. We collected 660 sediment samples from 55 transects along the Dutch North Sea coast, covering established dunes, incipient dunes, the upper intertidal zone, and the lower intertidal zone. Using environmental DNA metabarcoding and habitat-specific joint species distribution models, we tested how distance-to-city was associated with community composition, operational taxonomic unit (OTU) richness, and OTU-level occurrence. We found compositional differentiation along the urban-proximity gradient in both dune habitats, particularly in incipient dunes, but not in the intertidal habitats. Across all habitats, communities far from cities were more similar to one another than communities near cities, indicating greater among-site compositional variation near urban areas. OTU richness and mean OTU occurrence probabilities increased with distance-to-city in the lower intertidal, upper intertidal, and established dunes. Incipient dunes showed no clear richness gradient or directional OTU-level response despite the strong compositional turnover, suggesting that the main response was community replacement rather than loss of OTUs. Overall, habitat position within the beach-dune ecotone influenced whether biodiversity responses to urban proximity led to directional filtering, compositional turnover, or increased community heterogeneity. Our findings show that biodiversity and impact assessments based on a single habitat may miss important ecological change in coastal habitats.

ecology↗

bioRxiv2025

Maternal exercise during lactation reprograms obesity-related changes in mammary metabolism to optimize milk fatty acids and offspring energy expenditure

Maternal obesity alters breast milk composition in ways that may predispose infants to excess adiposity. While maternal exercise during lactation has been associated with favorable shifts in milk metabolites in humans, the mechanisms by which exercise remodels the mammary gland and milk lipid profile to influence offspring metabolism remain unclear. We developed a mouse model incorporating daily moderate treadmill exercise during lactation, indirect calorimetry, stable isotope tracer respirometry, and mammary epithelial cell (MEC) proteomics in lean (LN) and diet-induced obese (OB) dams. Maternal obesity broadly remodeled the MEC proteome, reducing enzymes of de novo fatty acid synthesis and altering lipid transport and oxidative pathways. These molecular adaptations corresponded to higher milk triglyceride content and shifts in fatty acid composition, including an elevated omega-6 to omega-3 fatty acid ratio. The exercise (EX) intervention during lactation reset MEC protein networks, enhancing translational and vesicle transport pathways while reducing fatty acid desaturation, relative to the sedentary (SED) group. In OB dams, exercise increased milk medium-chain fatty acid (MCFA) levels and partially corrected the n6/n3 FA ratio. Offspring nursed by OB-EX dams exhibited higher whole-body energy expenditure, increased fatty acid oxidation, and improved metabolic flexibility compared to litters consuming OB-SED milk. Together, maternal exercise during lactation remodels mammary metabolism and milk fatty acid composition in obese dams, enhancing neonatal lipid oxidation and energy expenditure. These findings highlight lactation as a modifiable window, wherein maternal activity influences milk composition and infant metabolic health. New and noteworthyMaternal obesity alters milk fatty acid composition, with consequences for infant metabolism. Exercise during lactation in obese dams remodeled the mammary epithelial cell proteome, increasing medium-chain fatty acids in milk and enhancing lipid oxidation and energy expenditure in offspring.

physiology↗