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Biology subjects

Marcantonio, M.

Publications and source records attributed to Marcantonio, M..

9 recordsLinked to original sources

On the evolution of dispersal strategies under the costs of acquisition of private and social information

Dispersal between patches of suitable habitat is a key behaviour for the survival of animal populations and is impacted by rapid environmental changes. Animals must cope with several costs related to the dispersal process, such as expenses in energy for acquiring information or increased mortality risks. There is a growing interest in studying how the costs of acquisition of information influence the dispersal be- haviour of species, and particularly how the use of social and private information can shape this behaviour over multiple generations. Current models of dispersal rarely incorporate both sources of information, and there is specifically a lack of modelling studies taking into account costs of acquisition for private and social information. We develop an agent-based model simulating a population of butterflies with genetic factors linked to the acquisition of both types of information and their associated reproductive costs. We show that different costs, environmental variability conditions and sensory abilities result in various dispersal behaviours and have an impact on the fitness of the population. In stable environments, low-cost information is used by a varying proportion of agents to disperse, but when the cost rises lightly, all agents stay uninformed. In highly variable environments, the same trend is observed, but agents rely on information even if the cost of acquisition increases up to twice compared to stable environments as it provides an evolutionary advantage. Agents with a limited perceptual range use both information sources equally in variable environments, and those with a bigger perceptual range rely exclusively on private information to take dispersal decisions, except at free cost of acquisition. Globally, the use of information induces a higher fitness for the population in stable environments if costs of acquisition are free or very low. In variable environmental conditions, the highest fitness is maintained with a limited perceptual range when the total cost rises up to twice the value found for stable environments. With a bigger perceptual range, the highest fitness is maintained for the whole range of total costs studied.

ecology↗

The rasterdiv package for measuring diversityfrom space

This book chapter provides an extensive overview of the rasterdiv package which provides a comprehensive suite of functions designed to calculate diversity indices from numerical matrices, including those derived from optical remote sensing imagery. It facilitates a deeper analysis of spatial heterogeneity and ecosystem complexity by translating pixel values into ecological indicators. This package serves as a valuable tool for researchers and practitioners in the fields of landscape ecology, biodiversity monitoring, and environmental management, allowing for an enhanced understanding of landscape patterns and their ecological implications through advanced quantitative measures.

ecology↗

Oviposition-related behaviours of Limenitis camilla in a common garden experiment

Human induced environmental changes are accelerating at an unprecedented pace, forcing organisms to rapidly adjust their behaviours. There is broad evidence that the main driver of the ongoing biodiversity crisis is land-use change, that reduces and fragments natural habitats. However, the consequence of habitat fragmentation on behavioural responses of fitness-related traits such as oviposition site selection in insects, which represent about 50% of \ Earths species diversity, have been so far understudied. In herbivorous insects, oviposition-related behaviours determine larval food access, and thus the fate of the next generation. We present a pilot study to assess differences in oviposition-related behaviours in Limenitis camilla butterflies from Wallonia (Belgium), one of the most fragmented regions in Europe. We first quantified variation in functional habitat connectivity for L. camilla across Wallonia and found that fragmented habitats had more abundant, but less evenly distributed Lonicera periclymenum, the host plant of L. camilla. Secondly, we compared in a semi-natural experimental setting the behaviours of field-caught L. camilla females originating from habitats with contrasted landscape connectivity. We found differences in behaviours related to flight investment: butterflies from fragmented woodlands spent more time in non-compass orientation flight, which we associated with dispersal, than butterflies from homogenous woodlands, where L. periclymenum was less abundant and more evenly distributed. Although results from this study should be interpreted with caution given the limited sample size, they provide valuable insights for the advancement of behavioral research that aims to assess the effects of global changes on insects.

animal behavior and cognition↗

dynamAedes: a unified modelling framework for invasive Aedes mosquitoes

O_LIMosquito species belonging to the genus Aedes have attracted the interest of scientists and public health officers for their invasive species traits and efficient capacity of transmitting viruses affecting humans. Some of these species were brought outside their native range by human activities such as trade and tourism, and colonised new regions thanks to a unique combination of eco-physiological traits. C_LIO_LIConsidering mosquito physiological and behavioural traits to understand and predict the spatial and temporal population dynamics is thus a crucial step to develop strategies to mitigate the local densities of invasive Aedes populations. C_LIO_LIHere, we synthesised the life cycle of four invasive Aedes species (Ae. aegypti, Ae. albopictus, Ae. japonicus and Ae. koreicus) in a single multi-scale stochastic modelling framework which we coded in the R package dynamAedes. We designed a stage-based and time-discrete stochastic model driven by temperature, photo-period and inter-specific larval competition that can be applied to three different spatial scales: punctual, local and regional. These spatial scales consider different degrees of spatial complexity and data availability, by accounting for both active and passive dispersal of mosquito species as well as for the heterogeneity of the input temperature data. C_LIO_LIOur overarching aim was to provide a flexible, open-source and user-friendly tool rooted in the most updated knowledge on species biology which could be applied to the management of invasive Aedes populations as well as for more theoretical ecological inquiries. C_LI

ecology↗

rasterdiv - an Information Theory tailored R package for measuring ecosystem heterogeneity from space: to the origin and back

O_LIEcosystem heterogeneity has been widely recognized as a key ecological feature, influencing several ecological functions, since it is strictly related to several ecological functions like diversity patterns and change, metapopulation dynamics, population connectivity, or gene flow. C_LIO_LIIn this paper, we present a new R package - rasterdiv - to calculate heterogeneity indices based on remotely sensed data. We also provide an ecological application at the landscape scale and demonstrate its power in revealing potentially hidden heterogeneity patterns. C_LIO_LIThe rasterdiv package allows calculating multiple indices, robustly rooted in Information Theory, and based on reproducible open source algorithms. C_LI

ecology↗

From zero to infinity: minimum to maximum diversity of the planet by spatio-parametric Rao's quadratic entropy

AimThe majority of work done to gather information on Earth diversity has been carried out by in-situ data, with known issues related to epistemology (e.g., species determination and taxonomy), spatial uncertainty, logistics (time and costs), among others. An alternative way to gather information about spatial ecosystem variability is the use of satellite remote sensing. It works as a powerful tool for attaining rapid and standardized information. Several metrics used to calculate remotely sensed diversity of ecosystems are based on Shannons Information Theory, namely on the differences in relative abundance of pixel reflectances in a certain area. Additional metrics like the Raos quadratic entropy allow the use of spectral distance beside abundance, but they are point descriptors of diversity, namely they can account only for a part of the whole diversity continuum. The aim of this paper is thus to generalize the Raos quadratic entropy by proposing its parameterization for the first time. InnovationThe parametric Raos quadratic entropy, coded in R, i) allows to represent the whole continuum of potential diversity indices in one formula, and ii) starting from the Raos quadratic entropy, allows to explicitly make use of distances among pixel reflectance values, together with relative abundances. Main conclusionsThe proposed unifying measure is an integration between abundance- and distance-based algorithms to map the continuum of diversity given a satellite image at any spatial scale.

ecology↗

Measuring diversity from space: a global view of the free and open source rasterdiv R package under a coding perspective

The variation of species diversity over space and time has been widely recognised as a key challenge in ecology. However, measuring species diversity over large areas might be difficult for logistic reasons related to both time and cost savings for sampling, as well as accessibility of remote ecosystems. In this paper, we present a new R package - rasterdiv - to calculate diversity indices based on remotely sensed data, by discussing the theory beyond the developed algorithms. Obviously, measures of diversity from space should not be viewed as a replacement of in-situ data on biological diversity, but they are rather complementary to existing data and approaches. In practice, they integrate available information of Earth surface properties, including aspects of functional (structural, biophysical and bio-chemical), taxonomic, phylogenetic and genetic diversity. Making use of the rasterdiv package can result useful in making multiple calculations based on reproducible open source algorithms, robustly rooted in Information Theory.

ecology↗

Assessing the re-introduction of Aedes aegypti in Europe. Will the Yellow Fever Mosquito colonize the Old World?

Aedes aegypti are feared invasive mosquitoes as they transmit pathogens which cause debilitating diseases in humans. Although mainland Europe has not yet witnessed re-establishment and diffusion of Ae. aegypti populations, several urban areas along coastlines represent suitable habitats for the species. In addition, European coastal areas are characterized by a high exotic species propagule pressure, due to the dense international ship traffic. Here, we applied a process-based population dynamical model to simulate both the life cycle and dispersal of Ae. aegypti at the local scale after its introduction through ship traffic. We selected five European ports along a gradient of latitude by considering both environmental conditions and the economical importance of ports: Algeciras and Barcelona in Spain; Venice and Genoa in Italy and Rotterdam in the Netherlands. The model was informed using parameters relevant for Ae. aegypti biology, fine-scale temperature time-series, urban structures and road networks. According to model results, the introduction of small quantities of Ae. aegypti eggs, from 10 to 1000, has the potential to cause species establishment, high local densities and slow initial dispersal in the two southernmost study areas, Algeciras and Barcelona, whereas Genoa may be considered only close to suitability. Barcelona had the highest simulated mosquito densities (584 females/ha), whereas Algeciras densities were never more than 32 females/ha, but remained higher during winter. The spatial spread of the species varied between a few hundred meters to 2 km/year and was affected by the structure of the road network, topography and urban sprawl along the coast in the surrounding of the port of introduction. The study areas of Genoa, Venice and Rotterdam were found not suitable for establishment of this mosquito species, however climate change could create conditions for Ae. aegypti invasion in these regions in the next decades. It is commonly accepted that targeted monitoring and early control actions are the most effective methods to hinder the establishment of invasive species in new areas. Our findings and model framework may support surveillance initiatives for those European coastal urban areas which have a known high propagule pressure and a high modelled probability of Ae. aegypti establishment. HighlightsO_LIEuropean coasts present favourable conditions for Aedes aegypti establishment C_LIO_LIWe assess the species introduction and establishment using a process-based model C_LIO_LIWe selected five ports: Algeciras, Barcelona, Venice, Genoa and Rotterdam C_LIO_LIAlgeciras and Barcelona were the most suitable areas for the species establishment C_LIO_LIClimate change could make more suitable the northernmost study areas C_LI

ecology↗

Whole genome assembly of Culex tarsalis

The mosquito, Culex tarsalis, is a key vector in the western United States due to its role in transmission of zoonotic arboviruses that affect human health. Extensive research has been conducted on Cx. tarsalis ecology, feeding behavior, vector competence, autogeny, diapause, genetics, and insecticide resistance. Population genetic analyses in the western U.S. have identified at least three genetic clusters that are geographically distinct. Salivary gland-specific gene expression has also revealed genes involved in blood feeding. However, genetic studies of this mosquito have been hindered by the lack of a reference genome. To facilitate genomic studies in Cx. tarsalis, we have assembled and annotated a reference genome (CtarK1) based on PacBio HiFi reads from a single male. Using the Cx. tarsalis transcriptome and protein sequences from Culex quinquefasciatus, approximately 17,456 protein-coding genes, including the para insecticide resistance gene, were annotated in the CtarK1 genome. Genome completeness was assessed using the Benchmarking Universal Single-Copy Orthologs (BUSCO) tool, which identified 84.8% of the 2799 Dipteran BUSCO genes. The CtarK1 assembly is 790Mb with an N50 of 58kb. Using full mitochondrial genome alignments with other sequenced mosquito genomes we present a Bayesian phylogeny, which estimates that the divergence of Cx. tarsalis from Culex quinquefasciatus, the most closely related mosquito species with a genome, occurred 15.8-22.2 million years ago.

genomics↗