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Biology subjects

Manzi, G.

Publications and source records attributed to Manzi, G..

2 recordsLinked to original sources

Lifestyle impacts the oral microbiome of Classical and Post-classical societies in Italy

ObjectivesThe fall of the Roman Empire (476 CE) profoundly affected the lives of its peoples due to the political, administrative, and territorial changes that occurred. The majority of written records of the time focus on the social elite, leaving larger parts of the population understudied. Here, we employ a bioarchaeological approach to understand how differences in lifestyle may be reflected in the oral microbiome of people from different social classes living before and after the fall. Material and MethodsWe analysed shotgun sequencing data from dental calculus, the preserved oral microbiome, of 67 individuals belonging to different social classes from two Classical cemeteries dated to I-III century CE (Lucus Feroniae and Isola Sacra) and one post-Classical cemetery dated to IV-VIII century CE (Selvicciola), all located in proximity to the city of Rome, Italy. ResultsWe detect significant differences in the oral microbiome taxonomic and functional composition across time periods and social classes, with the rural town of Lucus Feroniae standing out compared to its two counterparts. Reliable identification of dietary items was not possible. DiscussionThe distinct oral microbiome of Lucus Feroniae could reflect differences in general health and subsistence practices. The rural position of this community may have mitigated the cyclical food crises that, instead, affected the contemporary Isola Sacra and the later community of Selvicciola, thereby buffering against the nutritional stress observed in these two locations.

genomics↗

Ancient human extinction risk: Implications from high-precision computation and fossil evidence

Reconstructing ancient population size history is essential for understanding the evolutionary origin of Homo sapiens. Using the fast infinitesimal time coalescent process (FitCoal), which precisely computes the expected site frequency spectrum (SFS), we revisited the debated population bottleneck that occurred approximately 930 thousand years ago. By benchmarking FitCoal against mushi and ten billion coalescent simulations, we demonstrate that FitCoal achieves both superior speed and accuracy in expected SFS estimation. Analyses of simulated datasets confirmed that FitCoal reliably recovered the bottleneck, whereas mushi failed under identical conditions. Independent fossil and paleoclimate evidence further corroborates the timing and evolutionary impact of this bottleneck, linking it to hominin dispersals, speciation events, and a subsequent increase in brain size. These findings refine the demographic history of Homo during the Pleistocene and highlight the importance of high-precision SFS computation for revealing critical evolutionary transitions that shaped modern human ancestry.

evolutionary biology↗