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Biology subjects

Mantilla, G.

Publications and source records attributed to Mantilla, G..

3 recordsLinked to original sources

Tracing the illicit Peruvian delicacy: proof-of-concept multiplex-PCR for the simultaneous detection of seven commercial Macrobrachium prawn species

The genus Macrobrachium (Decapoda, Palaemonidae) comprises nearly 300 prawn species distributed worldwide. At least nine of these species naturally inhabit the Pacific slope river systems of Peru, where most sustain significant artisanal fisheries and are highly prized as a luxury delicacy in the nations traditional cuisine. Here, we developed and validated a multiplex PCR assay with species-specific primers to identify seven Macrobrachium species of economic importance to Peru. Through robust validation, our assays achieved high specificity and efficiency, enabling fast and simultaneous identification of the seven target species. The utility of our novel multiplex PCR assay was evaluated as a proof-of-concept tool for conducting the first molecular monitoring of species diversity and illegal trade in Peruvian prawns across different commercial sectors. Among the 51 analyzed commercial prawn samples, a total of four species were detected, including M. caementarius (82.4%), M. rosenbergii (11.8%), M. americanum (3.9%), and M. gallus (1.9%). Notably, our molecular monitoring in restaurants revealed the first evidence of illegal trade in native wild-caught prawns in La Libertad region occurring during the reproductive closed season, when only the market of the exotic farmed prawn M. rosenbergii is permitted. These findings underscore the urgent need for enhanced monitoring programs in prawn fisheries in northern Peru, as current efforts are mainly focused on more productive central and southern regions. Our multiplex PCR assay provides a robust and efficient tool that can assist authorities and researchers in monitoring efforts, combating illegal trade, conducting diversity research, and supporting conservation.

genetics↗

A complete mitochondrial genome-based phylogeny of gooseneck barnacles confirms the sister group relationship between the eastern Pacific Pollicipes elegans and the eastern Atlantic P. pollicipes

BackgroundGooseneck barnacles are a fascinating invertebrate group and their taxonomic classification has attracted the attention of several specialists, including Charles Darwin, who was the first to note the close relationship between two species of gooseneck barnacles found on the eastern coasts of the Pacific, Pollicipes elegans, and the Atlantic, P. pollicipes. Additionally, a third species from the eastern Pacific, P. polymerus, was believed to have diverged earlier from the group. Methods and resultsHere, we used genomic short-read sequences publicly available in GenBank to assemble the first complete mitochondrial genome of P. elegans. We conducted a phylogenetic analysis to assess the relationships among its related species and other cirripede species from the superorder Thoracicalcarea. Our phylogenetic findings based on complete mitogenomes reinforce the close relationship between P. elegans and P. pollicipes, with P. polymerus emerging as a basal branch, indicating an earlier divergence from the group. ConclusionsOur analysis provided the first robust phylogenetic assessment of P. elegans, strongly supporting its close relationship with P. pollicipes. Further efforts should aim to sequence the complete mitogenomes of other species within the order Pollicipedomorpha. This endeavor will enable a more comprehensive phylogenetic analysis of this group, whose classification remains a subject of debate.

genomics↗

Metagenomes from the Loxahatchee wildlife refuge in the Florida Everglades

The Florida Everglades ecosystem represents a significant wetlands area and serves as a terrestrial carbon reservoir mediated in large part by microorganisms. Shotgun metagenome sequencing provides a snapshot of microbial diversity and the frequency of metabolic and functional gene content. Here, we present an analysis of 20 sediment samples collected from the Arthur R. Marshall Loxahatchee National Wildlife Refuge to characterize the taxonomic and functional potential of the microbial and viral communities, and reconstructed metagenome-assembled genomes. A total of 122 medium-quality and 6 high-quality MAGs are reported, three of which likely represent a novel species within the class Dehalococcoidia. The most abundant phyla of bacteria and archaea were Proteobacteria and Euryarchaeota, respectively. Caudovirales was the most abundant viral order. Significant differences in taxonomic composition and diversity were observed among collection sites. Additionally, water samples were analyzed for pH, total nitrogen, total organic carbon, elements (P, K, Mg, Fe, Mn, Pb, Ca, S), chloride, electric conductivity, orthophosphate, nitrate, and ammonia, while the sediment samples were analyzed for carbon, nitrogen, and pH. Differences in measured aquatic and sediment analytes revealed significant correlations with numerous phyla. Significant correlations were observed between estimated gene frequencies of both aquatic and sediment analytes, most notably between kup/kdpB and dsrA/cysC with potassium and sulfur, respectively, as well as phoD/phnX and cysC with pH. Together, these data provide an important view into the functional and metabolic potential encoded within the sediment microbial communities in the Florida Everglades.

microbiology↗