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Biology subjects

Manthey, G.

Publications and source records attributed to Manthey, G..

2 recordsLinked to original sources

The unexpected consequences of predictor error in ecological model selection

1O_LIThe ability to select statistical models based on how well they fit an empirical dataset is a central tenet of modern bioscience. How well this works, though, depends on how goodness-of-fit is measured. Likelihood and its derivatives (e.g. AIC) are popular and powerful tools when measuring goodness-of-fit, though inherently make assumptions about the data. One such assumption is absence of error on the x-axis (i.e. no error in the predictor). This, however, is often not correct and deviations from this assumption are often hard (or impossible) to measure. C_LIO_LIHere, we show that, when predictor error is present, goodness-of-fit as perceived using likelihood will increase with decreases in sample size, effect size, predictor error and predictor variance. This results in predictors with increased effect size, predictor variance or predictor error being punished. As a consequence, we suggest that larger effect sizes are biased against in likelihood-based model comparison. Of note: (i) this problem is exacerbated in datasets with larger samples sizes and a broader range of predictor values - typically considered desirable biological data collection; and (ii) the magnitude of this effect is non-trivial given that proxy error (caused by using correlates of a predictor rather than the predictor itself) can lead to unexpectedly high amounts of error. C_LIO_LIWe investigate the effects of our findings in an empirical dataset of wood anemone (Anemone nemorosa) first flowering date regressed against temperature. Our results show that the proxy error caused by using air temperature rather than ground temperature results in a {triangleup}AIC of around 3. We also demonstrate potential consequences for model selection procedures with autocorrelation (e.g. sliding window approaches). Via simulation we show that in the presence of predictor error AIC will favour autocorrelated, lower effect size predictors (such as those found on the edges of predictive windows), rather than the a priori specified true window. C_LIO_LIOur results suggest significant and far-reaching implications for biological inference with model selection for much of todays ecology using observational data under non-experimental conditions. We assert that no obvious, globally-applicable solution to this problem exists; and propose that quantifying predictor error is key in accurate ecological model selection going forward. C_LI

ecology↗

Evidence for adaptive evolution towards high magnetic sensitivity of potential magnetoreceptor in songbirds

Migratory birds possess remarkable accuracy in orientation and navigation, which involves various compass systems including the magnetic compass. Identifying the primary magnetosensor remains a fundamental open question. Cryptochromes (Cry) have been shown to be magnetically sensitive, specifically Cry4 shows enhanced magnetic sensitivity in migratory songbirds compared to resident species. Here, we investigate cryptochromes and their potential involvement in magnetoreception in a phylogenetic framework, integrating molecular evolutionary analyses with protein dynamics modeling. We base our analysis on 363 bird genomes and associate different selection regimes with migratory behaviour. We show that Cry4 is characterized by strong positive selection and high variability, typical characteristics of sensor proteins. We identify key sites that likely facilitated the evolution of a highly optimized sensory protein for night time compass orientation in songbirds and a potential functional shift or specialisation. Additionally, we show that Cry4 was lost in hummingbirds, parrots and Tyranni (Suboscines) and thus identified a natural comparative gene knockout, which can be used to test the function of Cry4 in birds. In contrast, the other two cryptochromes Cry1 and Cry2, were highly conserved in all species, indicating basal, non-sensory functions. Our results strengthen the hypothesised role of Cry4 as sensor protein in (night)-migratory songbirds.

evolutionary biology↗