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Mansfeldt, C.

Publications and source records attributed to Mansfeldt, C..

2 recordsLinked to original sources

Modeling the microbiome of Utah's Great Salt Lake: A regression analysis of key abiotic factors impacting growth of Dunaliella green algae in the GSL's South Arm

Since the mid-1800s, Utahs Great Salt Lake (GSL) has undergone dramatic changes. Due to the effects of climate change and an increase in agricultural, industrial, and residential water usage to support population growth, the present water level has fallen to about one-fourth of its highest recorded level in 1987 [1, 2]. As Earths global air and water temperatures continue to rise, evaporation rates from this closed basin will also rise, thus increasing the salinity of this already hypersaline lake. A shift in water chemistry from its current salinity of 15% to a halite saturation of 30% will negatively impact the populations of Dunaliella viridis - a halophilic species of green algae that form the basis of the simple but delicate food web in the South Arm of the GSL. Disruption of the D. viridis population through increased water temperature and salinity will spur a negative cascade throughout the food chain by reducing brine shrimp populations and thereby threaten local and migratory bird populations. Since increasing water temperature and salinity can have such deleterious ramifications on both D. viridis and the overall lake ecosystem, a predictive model that maps the impact of changing water temperature and salinity to specific growth values for D. viridis is needed for forecast-assisted management. In support of this goal, we developed a multiple linear regression model using twelve years of observational data consisting of chlorophyte (of which Dunaliella are the dominant species) population concentrations under co-varying water temperature and salinity. The resulting fitted data produced an R2 value of 0.17 with a RMSPE of 100.704, and additional diagnostics were conducted to verify the model. Overall, this model predicts that chlorophyte populations will decrease by 0.41 g/L for each 1% increase in salinity and decrease by 0.74 g/L for each 1{degrees}C increase in water temperature up to the extinction point of 30% salinity and 45{degrees}C. One limitation of the linear regression model is its inability to capture trace algal population concentrations at 0 g/L. To address this, we also developed a zero-inflated Poisson regression model, which predicts similar decreases in chlorophyte populations for increasing water temperature and salinity as the linear regression model. The fitted data for this model produced a pseudo-R2 value of 0.35 with a RMSPE of 90.026. This model predicts that chlorophyte populations will decrease by 0.16 g/L for each 1% increase in salinity and decrease by 0.13 g/L for each 1{degrees}C increase in water temperature up to the extinction point of 30% salinity and 45{degrees}C. Even for a limited climate change scenario of an increase in air/water temperature of 2.5{degrees}C and an associated increase in salinity by 7.5%, the linear regression model predicts a potential loss of [~]224, 000 kg total of chlorophytes from the South Arm of the GSL (based on the median chlorophyte concentration between 2001 and 2006), while the Poisson regression model predicts a potential loss of [~]173, 200 kg of chlorophytes. Continued research will include model selection and error quantification. More broadly, future work aims to constrain chlorophyta population predictions based on D. viridis growth limits under maximum water temperature and salinity thresholds obtained from controlled laboratory experiments, which can be used to identify a microbial tipping point of the GSL.

ecology↗

A metagenomic investigation of spatial and temporal changes in sewage microbiomes across a university campus

Wastewater microbial communities are not static and can vary significantly across time and space, but this variation and the factors driving the observed spatiotemporal variation often remain undetermined. We used a shotgun metagenomic approach to investigate changes in wastewater microbial communities across 17 locations in a sewer network, with samples collected from each location over a 3-week period. Fecal-derived bacteria constituted a relatively small fraction of the taxa found in the collected samples, highlighting the importance of environmental sources to the sewage microbiome. The prokaryotic communities were highly variable in composition depending on the location within the sampling network and this spatial variation was most strongly associated with location-specific differences in sewage pH. However, we also observed substantial temporal variation in the composition of the prokaryotic communities at individual locations. This temporal variation was asynchronous across sampling locations, emphasizing the importance of independently considering both spatial and temporal variation when assessing the wastewater microbiome. The spatiotemporal patterns in viral community composition closely tracked those of the prokaryotic communities, allowing us to putatively identify the bacterial hosts of some of the dominant viruses in these systems. Finally, we found that antibiotic resistance gene profiles also exhibit a high degree of spatiotemporal variability with most of these genes unlikely to be derived from fecal bacteria. Together these results emphasize the dynamic nature of the wastewater microbiome, the challenges associated with studying these systems, and the utility of metagenomic approaches for building a multi-faceted understanding of these microbial communities and their functional attributes. ImportanceSewage systems harbor extensive microbial diversity, including microbes derived from both human and environmental sources. Studies of the sewage microbiome are useful for monitoring public health and the health of our infrastructure, but the sewage microbiome can be highly variable in ways that are often unresolved. We sequenced DNA recovered from wastewater samples collected over a 3-week period at 17 locations in a single sewer system to determine how these communities vary across time and space. Most of the wastewater bacteria, and the antibiotic resistance genes they harbor, were not derived from human feces, but human usage patterns did impact how the amounts and types of bacteria and bacterial genes we found in these systems varied over time. Likewise, the wastewater communities, including both bacteria and their viruses, varied depending on location within the sewage network, highlighting the challenges, and opportunities, in efforts to monitor and understand the sewage microbiome.

microbiology↗