Biology subjects

Manabe, H.

Publications and source records attributed to Manabe, H..

14 recordsLinked to original sources

bioRxiv2025

A subtype of ultrasonic vocalizations during highly palatable food consumption in rats identified by machine learning-assisted classification

Identifying behavioral and physiological responses to rewarding stimuli is essential for understanding positive emotional states in animals and for investigating their neural basis. Ultrasonic vocalizations (USVs) in rats are modulated by various behavioral contexts and are thought to represent affective-like states. However, their diversity during palatable food consumption remains underexplored. In this study, we investigated acoustic features of USVs in male rats consuming chocolate, a highly palatable food. Using a machine-learning-assisted logistic regression model trained on spectrogram features, we identified a distinct USV subtype--the 40-kHz inverted-U type--that was selectively emitted during chocolate consumption. The emission of this subtype was tightly time-locked to chocolate feeding behavior. Systemic administration of naloxone, an opioid receptor antagonist, significantly reduced the emission of the 40-kHz inverted-U USVs during chocolate intake. These findings suggest that these USVs may reflect internal states associated with palatable feeding and are under modulation by the endogenous opioid system. Moreover, our data demonstrate the utility of machine learning for high-throughput, objective classification of USV subtypes. This framework provides a promising approach for decoding emotion-related vocal expressions in rats and highlights the potential of specific USVs as behavioral readouts for studying the neurobiology of positive emotions. Significance StatementUltrasonic vocalizations (USVs) are high-frequency calls produced by rats known to correlated with emotional and motivational states, yet their diversity and functional relevance remain underexplored. In this study, we identified a novel 40-kHz inverted-U USV subtype associated with chocolate consumption. These calls were closely tied to feeding behavior and were selectively suppressed by an opioid receptor antagonist, suggesting modulation by the brains reward system. Using machine learning-assisted classification, we established a robust method to detect these vocalizations. Our findings highlight the potential of specific USVs as non-invasive, real-time behavioral indicators of internal states, offering new tools for studying affect, reward, and communication in animal models.

neuroscience↗

bioRxiv2025

Behavioral expression of decision confidence engages disentangled confidence coding in the orbitofrontal cortex

Task engagement is thought to recruit subsets of neurons encoding task-relevant variables, but it remains unclear whether it also reorganizes the geometry of population codes and how such reorganization supports behavior. Here we show that, in the orbitofrontal cortex (OFC), task engagement aligns population activity along a confidence axis, thereby enabling the behavioral use of decision confidence. We recorded OFC activity while rats performed two variants of the same perceptual decision-making task that differed only in reward-timing uncertainty, which altered the utility of post-decision confidence for guiding reward waiting. OFC neurons exhibited more linear responses to confidence when confidence was more strongly expressed in behavior. Although the proportion of OFC neurons encoding confidence was similar across strategies, strategy-dependent alignment of population activity to confidence emerged under variable long delays, and this alignment predicted confidence-based waiting behavior. These findings suggest that OFC population codes flexibly adapt to the behavioral relevance of task variables, linking cognitive strategy to the geometry of neural representation.

neuroscience↗

bioRxiv2024

CytoSignal Detects Locations and Dynamics of Ligand-Receptor Signaling at Cellular Resolution from Spatial Transcriptomic Data

Nearby cells within tissues communicate through ligand-receptor signaling interactions. Emerging spatial transcriptomic technologies provide a tremendous opportunity to systematically detect ligand-receptor signaling, but no method operates at cellular resolution in the spatial context. We developed CytoSignal to infer the locations and dynamics of cell-cell communication at cellular resolution from spatial transcriptomic data. CytoSignal is based on the simple insight that signaling is a protein-protein interaction that occurs at a specific tissue location when ligand and receptor are expressed in close spatial proximity. Our cellular-resolution, spatially-resolved signaling scores allow several novel types of analyses: we identify spatial gradients in signaling strength; separately quantify the locations of contact-dependent and diffusible interactions; and detect signaling-associated differentially expressed genes. Additionally, we can predict the temporal dynamics of a signaling interaction at each spatial location. CytoSignal is compatible with nearly every kind of spatial transcriptomic technology including FISH-based protocols and spot-based protocols without deconvolution. We experimentally validate our results in situ by proximity ligation assay, confirming that CytoSignal scores closely match the tissue locations of ligand-receptor protein-protein interactions. Our work addresses the fields current need for a robust and scalable tool to detect cell-cell signaling interactions and their dynamics at cellular resolution from spatial transcriptomic data.

bioinformatics↗

bioRxiv2023

An intra-oral flavor discrimination task in freely moving mice

Flavor plays a critical role in the pleasure of food. Flavor research has mainly focused on human subjects and revealed that many brain regions are involved in flavor perception. However, animal models for elucidating the mechanisms of neural circuits are lacking. Herein, we demonstrate the use of a novel behavioral task in which mice are capable of flavor discrimination. When the olfactory pathways of the mice were blocked, they could not perform the task. However, behavioral accuracy was not affected when the gustatory pathway was blocked by benzocaine. These results indicate that the mice performed this discrimination task mainly based on the intraoral flavor. We conclude that this novel task can contribute to research on the neural mechanisms of flavor perception.

neuroscience↗

bioRxiv2021

Regulation of the cognitive aging process by the transcriptional repressor RP58

SummaryIn humans, cognitive and motor functions develop in association with maturation, followed by a decline in advancing age. In this study, we aimed to provide a method for extending healthy lifespan by preventing age-related phenomena. Therefore, we focused on RP58, a transcriptional repressor, whose expression is reduced during aging in the human cortex. In the Rp58 hetero-knockout (KO) mice, object location memory was impaired even at 4-5 months, while it was normal in the wild-type mice at 4-5 months but was impaired at 12-18 months. These results indicate an early onset of impaired spatial memory in the mutant mice. As the underlying mechanism, the Rp58 hetero-KO mice showed early onset of DNA damage accumulation and microglial activation in the dentate gyrus due to a DNA repair defect that is generally observed with aging. As another hallmark of aging, we focused on mitochondrial function and detected mitochondrial abnormalities in the Rp58 hetero-KO mice at 4-5 months. Notably, continuous treatments with minocycline, a neuroprotective and anti-inflammatory antibiotic, prevented the facilitation of age-related phenomena in the Rp58 hetero-KO mice. These results suggest the availability of the Rp58 hetero-KO mice as a novel mouse model of human-like early aging and provide a therapeutic strategy to prevent age-related phenomena using minocycline. HighlightO_LIRp58 hetero-KO mice exhibit early aging phenotypes including impairment of spatial cognition C_LIO_LIRp58 hetero-KO mice show early accumulation of DNA damage due to a defect in the DNA repair system C_LIO_LITreatment with minocycline prevented cognitive dysfunction observed in Rp58 hetero-KO mice C_LI

neuroscience↗

bioRxiv2020

Encoding of odor information and reward anticipation in anterior cortical amygdaloid nucleus

Olfactory information directly reaches the amygdala through the olfactory cortex, without the involvement of thalamic areas, unlike other sensory systems. The anterior cortical amygdaloid nucleus (ACo) is one of the olfactory cortices that receives olfactory sensory input, and is part of the olfactory cortical amygdala, which relays olfactory information to the amygdala. To examine its electrophysiological features, we recorded individual ACo neurons during the odor-guided go/no-go task to obtain a water reward. Many ACo neurons exhibited odor-evoked go cue-preferred during the late phase of odor-sampling supporting the population dynamics that differentiate go/no-go responses before executing the odor-evoked behaviors. We observed two types of neurons with different anticipation signals: one neuron type exhibited gradual increases of activity toward reward delivery, while another type exhibited a phasic go cue-preferred activity during odor sampling as well as another phasic anticipatory activity for rewards. These results suggest that the ACo may be involved in reward-related behavioral learning by associating the olfactory information with reward anticipation.

neuroscience↗

bioRxiv2020

Bi-directional encoding of context-based odor signals and behavioral states by the nucleus of the lateral olfactory tract neurons

The nucleus of the lateral olfactory tract (nLOT) is not only a part of the olfactory cortex that receives olfactory sensory inputs from the olfactory bulb, but also one of the cortical amygdala areas that regulates motivational behaviors. To examine how the neural ensemble activity of the nLOT is modulated by motivational processes that occur during various states of learned goal-directed behaviors, we recorded nLOT spike activities of mice performing odor-guided go/no-go tasks for obtaining a water reward. We found that the majority of the nLOT neurons exhibited sharp go-cue excitation and persistent no-go-cue inhibition responses triggered by an odor onset. The bi-directional cue encoding introduced nLOT population response dynamics and provided a high odor decoding accuracy before executing cue-odor-evoked behaviors. The go-cue preferred neurons were also activated in the reward drinking state, indicating context-based odor-outcome associations. These findings suggest that the nLOT neurons play an important role in the translation from context-based odor information to appropriate behavioral motivation.

neuroscience↗

bioRxiv2020

Accurate perceptual decision driven by distinct population dynamics in association and sensory cortex

It is widely assumed that variability in visual detection performance is attributed to the fidelity of the visual responses in visual cortical areas, which could be modulated by fluctuations of internal states such as vigilance and behavioral history. However, it is not clear what neural ensembles represent such different internal states. Here, we utilized a visual detection task, which distinguishes perceptual states to identical stimuli, while recording neurons simultaneously from the primary visual cortex (V1) and the posterior parietal cortex (PPC). We found distinct population dynamics segregating hit responses from misses despite no clear differences in visual responses. The population-level computation was significantly contributed by heterogenous non-sensory neurons in V1, whereas the contribution from non-neurons with the previous outcome selectivity was prominent in PPC. These results indicate different contributions of non-sensory neurons in V1 and PPC for the population-level computation that enables behavioral responses from visual information.

neuroscience↗

bioRxiv2019

Dynamic coding of choice targets in the perirhinal cortex

Cortical neurons show distinct firing patterns across multiple task-epochs characterized by distinct computational aspects. Recent studies suggest that such distinct patterns underly dynamic population code achieving computational flexibility, whereas neurons in some cortical areas often show coherent firing patterns across epochs. To understand how such coherent single-neuron code contribute to dynamic population code, we analyzed neural responses in the perirhinal cortex (PRC) during cue and reward epochs of a two-alternative forced-choice task. We found that the PRC neurons often encoded the opposite choice-directions between those epochs. By using principal component analysis as population-level analysis, we identified neural subspaces associated with each epoch, which reflected coordinated patterns across the neurons. The cue and reward epochs shared neural dimensions where the choice directions were consistently discriminated. Interestingly, those dimensions were supported by dynamically changing contributions of individual neurons. These results indicated heterogeneity of coherent single-neuron responses in their contribution to population code.

neuroscience↗

bioRxiv2018

Respiration-phased switching between sensory inputs and top-down inputs in the olfactory cortex

Olfactory perception depends on respiration phases: olfactory cortex processes external odor signals during inhalation whereas it is isolated from the external odor world during exhalation. Olfactory cortex pyramidal cells receive the sensory signals via bottom-up pathways terminating on superficial layer (SL) dendrites while they receive top-down inputs on deep layer (DL) dendrites. Here we asked whether olfactory cortex pyramidal cells spontaneously change the action modes of receiving olfactory sensory inputs and receiving top-down inputs in relation to respiration phases. Current source density analysis of local field potentials recorded in three different olfactory cortex areas of waking immobile rats revealed {beta}- and {gamma}-range fast oscillatory current sinks and a slow current sink in the SL during inhalation, whereas it showed {beta}- and {gamma}-range fast oscillatory current sinks and a slow current sink in the DL during exhalation. Sensory deprivation experiments showed that inhalation-phased olfactory sensory inputs drove the inhalation-phased fast oscillatory potentials in the SL but they drove neither the inhalation-phased slow current sink in the SL nor the exhalation-phased slow current sink in the DL. The results indicate that independent of inhalation-phased olfactory sensory inputs, olfactory cortex pyramidal cells spontaneously generate a slow depolarization in the SL dendrites during inhalation, which may selectively boost the concomitant olfactory sensory inputs to elicit spike outputs. In addition, the pyramidal cells spontaneously generate slow depolarization in the DL dendrites during exhalation, which may assist top-down inputs to elicit spike outputs. We thus hypothesize that the olfactory cortical areas coordinately perform inhalation/exhalation-phased switching of input biasing: inhalation phase is the time window for external odor signals that arrive in the SL dendrites, whereas exhalation phase is assigned to boost top-down signals to the DL dendrites that originate in higher brain centers.

neuroscience↗

bioRxiv2018

Tuning of ventral tenia tecta neurons of the olfactory cortex to distinct scenes of feeding behavior

Ventral tenia tecta (vTT) is a part of the olfactory cortex that receives both olfactory sensory signals from the olfactory bulb and top-down signals from the prefrontal cortex. To address the question whether and how the neuronal activity of the vTT is modulated by prefrontal cognitive processes such as attention, expectation and working memory that occurs during goal-directed behaviors, we recorded individual neuronal responses in the vTT of freely moving awake mice that performed learned odor-guided feeding and drinking behaviors. We found that the firing pattern of individual vTT cells had repeatable behavioral correlates such that the environmental and behavioral scene the mouse encountered during the learned behavior was the major determinant of when individual vTT neurons fired maximally. Furthermore, spiking activity of these scene cells was modulated not only by the present scene but also by the future scene that the mouse predicted. We show that vTT receives afferent input from the olfactory bulb and top-down inputs from the medial prefrontal cortex and piriform cortex.\n\nThese results indicate that different groups of vTT cells are activated at different scenes and suggest that processing of olfactory sensory information is handled by different scene cells during distinct scenes of learned feeding and drinking behaviors. In other words, during the feeding and drinking behavior, vTT changes its working mode moment by moment in accord with the scene change by selectively biasing specific scene cells. The scene effect on olfactory sensory processing in the vTT has implications for the neuronal circuit mechanisms of top-down attention and scene-dependent encoding and recall of olfactory memory.

neuroscience↗

bioRxiv2018

Opposing roles of dopamine receptor D1- and D2-expressing neurons in the anteromedial olfactory tubercle in acquisition of place preference in mice

Olfaction induces adaptive motivated behaviors. Odors associated with food induce attractive behavior, whereas those associated with dangers induce aversive behavior. We previously reported that learned odor-induced attractive and aversive behaviors accompany activation of the olfactory tubercle (OT) in a domainand cell type-specific manner. Odor cues associated with a sugar reward induced attractive behavior and c-fos expression in the dopamine receptor D1-expressing neurons (D1 neurons) in the anteromedial OT. In contrast, odor cues associated with electrical shock induced aversive behavior and c-fos expression in the D2 neurons in the anteromedial OT, as well as the D1 neurons in the lateral OT. Here, we investigated whether the D1 and D2 neurons in the anteromedial OT play distinct roles in attractive or aversive behaviors, using optogenetic stimulation and real-time place preference (RTPP) tests. Mice expressing ChETA (ChR2/E123T)-EYFP in the D1 neurons in the anteromedial OT spent a longer time in the photo-stimulation side of the place preference chamber than the control mice expressing EYFP. On the other hand, upon optogenetic stimulation of the D2 neurons in the anteromedial OT, the mice spent a shorter time in the photo-stimulation side than the control mice. Local neural activation in the anteromedial OT during the RTPP tests was confirmed by c-fos mRNA expression. These results suggest that the D1 and D2 neurons in the anteromedial OT play distinct roles in attractive and aversive behaviors, respectively.

neuroscience↗

bioRxiv2018

GABAergic neurons in the olfactory cortex projecting to the lateral hypothalamus in mice

Olfaction guides goal-directed behaviours including feeding. To investigate how central olfactory neural circuits control feeding behaviour in mice, we performed retrograde tracing from the lateral hypothalamus (LH), an important feeding centre. We observed a cluster of retrogradely labelled cells distributed in the posteroventral region of the olfactory peduncle. Histochemical analyses revealed that a majority of these retrogradely labelled projection neurons expressed glutamic acid decarboxylase 65/67 (GAD65/67), but not vesicular glutamate transporter 1 (VGluT1). We named this region with GABAergic projection neurons the ventral olfactory nucleus (VON) to discriminate it from the conventional olfactory peduncle. VON neurons were less immunoreactive for DARPP-32, a striatal neuron marker, in comparison to those in the olfactory tubercle and nucleus accumbens, which distinguished the VON from the ventral striatum. Fluorescent labelling confirmed synaptic contacts between VON neurons and olfactory bulb projection neurons. Rabies-virus-mediated trans-synaptic labelling revealed that VON neurons received synaptic inputs from the olfactory bulb, other olfactory cortices, horizontal limb of the diagonal band, and prefrontal cortex. Collectively, these results identified novel GABAergic projection neurons in the olfactory cortex that can integrate olfactory sensory and top-down inputs and send inhibitory output to the LH, which may contribute to forming odour-guided LH-related behaviours.

neuroscience↗

bioRxiv2018

Sharp wave-associated activity patterns of olfactory cortical neurons in the mouse piriform cortex

The olfactory piriform cortex is thought to participate in olfactory associative memory. Like the hippocampus, which is essential for episodic memory, it belongs to an evolutionally conserved paleocortex and comprises a three-layered cortical structure. During slow-wave sleep, the olfactory piriform cortex becomes less responsive to external odor stimuli and instead displays sharp wave (SPW) activity similar to that observed in the hippocampus. Neural activity patterns during hippocampal SPW have been intensively studied in terms of memory consolidation; however, little is known about the activity patterns of olfactory cortical neurons during olfactory cortex sharp waves (OC-SPWs). In this study, we recorded multi-unit neural activities in the anterior piriform cortex in urethane-anesthetized mice. We found that the activity patterns of olfactory cortical neurons during OC-SPWs were non-randomly organized. Individual olfactory cortical neurons varied in the timings of their peak firing rates during OC-SPW events. Moreover, specific pairs of olfactory cortical neurons were more frequently activated together than expected by chance. On the basis of these observations, we speculate that coordinated activation of specific subsets of olfactory cortical neurons repeats during OC-SPWs, thereby facilitating synaptic plasticity underlying the consolidation of olfactory associative memories.

neuroscience↗