Biology subjects

Malinowski, R.

Publications and source records attributed to Malinowski, R..

9 recordsLinked to original sources

bioRxiv2026

Enhancing slow-wave sleep via non-invasive brain stimulation modulates brain-to-blood clearance of Alzheimer's disease biomarkers

Sleep disturbances and neurodegeneration form a bidirectional vicious cycle. During slow-wave sleep, glymphatic processes are thought to facilitate the clearance of metabolic waste, including proteins implicated in Alzheimers disease (AD). Aging, and more prominently neurodegeneration, is associated with reductions in slow-wave activity (SWA), which may impair these processes. Within SWA, slow oscillations (SO, <1 Hz) and their coupling to sleep spindles capture key aspects of sleep microstructure. Non-invasive brain stimulation during sleep has emerged as a potential approach to modulate these dynamics; however, human evidence linking such modulation to AD biomarkers remains scarce. In this exploratory mechanistic study, ten healthy older adults underwent one night of slow-oscillatory transcranial current stimulation (so-tDCS) and one sham night in a randomized crossover design, followed by five consecutive stimulation nights. Stimulation was applied during NREM sleep (N2/N3) in the first half of the night. Plasma phosphorylated tau (p-tau)181, {beta}-amyloid (A{beta})42, A{beta}40, and total tau were assessed overnight and longitudinally. EEG analyses quantified SO power and SO-spindle coupling. Due to the exploratory character of the study, analyses emphasized effect size estimation and explained variance. So-tDCS induced small-to-moderate increases in SO power and SO-spindle coupling. Overnight increases in plasma p-tau181 were observed following stimulation relative to sham. Increases in SO power were strongly and positively associated with p-tau181 changes, explaining a substantial proportion of inter-individual variance. In contrast, shifts in SO-spindle coupling phase toward the SO up-state were associated with overnight increases in A{beta}42 and A{beta}40 and with longitudinal decreases in A{beta}42 and the A{beta}42/40 ratio. Enhancing slow oscillatory dynamics during sleep is associated with changes in peripheral AD biomarkers. Differential associations for SO power and SO-spindle coupling timing suggest partially distinct links to tau and A{beta} dynamics. These findings support sleep microstructure as a potential intervention target, and should be confirmed in larger cohorts.

neuroscience↗

bioRxiv2026

A clubroot pathogen PBS3-like effector manipulates hormonal crosstalk to alter root morphology during colonization

O_LISalicylic acid (SA) and auxin are key regulators of plant immunity and development. The clubroot pathogen Plasmodiophora brassicae encodes PbGH3, an effector related to the GH3 family involved in phytohormone homeostasis. Although PbGH3 was proposed to conjugate auxin in vitro, its biological function in planta has remained unclear. This study aimed to determine the in vivo role of PbGH3 during host colonization. C_LIO_LIWe generated Arabidopsis thaliana and Brassica napus lines overexpressing PbGH3 and characterized their developmental phenotypes, hormone profiles, gene expression, and susceptibility to infection. Structural modeling was performed to assess PbGH3 similarity to plant GH3 proteins, and functional complementation was tested using the Arabidopsis gh3.12 mutant. C_LIO_LIThe expression of PbGH3 in Arabidopsis induced auxin-related developmental phenotypes without detectable accumulation of auxin conjugates. Instead, PbGH3 structurally and functionally resembled GH3.12/PBS3 inducing increased conjugated SA levels, reduced jasmonic acid, suppressed PIN2 expression, and increased root hair number and infection. PbGH3 complemented SA-related defects in the gh3.12 mutant. C_LIO_LIPbGH3 functions as a modulator of SA metabolism rather than an auxin-conjugating enzyme, likely competing with host GH3.12/PBS3 to constrain effective SA accumulation. This reveals a novel strategy by which P. brassicae disrupts SA-auxin homeostasis to promote host colonization and ensure disease development. C_LI PLAIN LANGUAGE SUMMARYThis study shows that the clubroot pathogen uses a protein called PbGH3 to modify the plants salicylic acid balance. This alters root traits and increases susceptibility to infection. Arabidopsis and canola plants engineered to produce PbGH3 showed similar changes, revealing that the pathogen uses this protein to disrupt hormone regulation and create conditions that support its colonization.

plant biology↗

bioRxiv2026

Temporo-Occipital and Medial Temporal Networks Underlying Object-Location Learning

Object-location memory (OLM), a fundamental component of spatial memory, is essential for everyday functioning yet declines with aging and neurodegenerative disorders. Functional neuroimaging studies have consistently implicated medial temporal lobe (MTL) structures, including the hippocampus and parahippocampal gyrus, as well as medial and lateral temporo-occipital regions, in object-location associative learning. However, the neural mechanisms and functional network interactions supporting OLM acquisition remain largely unknown. To address this gap, we examined twenty healthy adults (18-45 years) performing an object-location learning task during functional MRI. As a first main finding, task-related functional connectivity analyses revealed enhanced coupling between MTL structures, ventral visual regions, and temporo-occipital cortices during OLM learning. Secondly, stronger connectivity within this network was associated with higher learning accuracy, highlighting the behavioral relevance of coordinated cortical-MTL interactions. Thirdly, these connectivity patterns were not static but evolved across learning stages: interregional coupling was strongest during early learning and progressively attenuated as performance stabilized, suggesting sharpening and increased efficiency of network interactions with learning. Together, our results provide mechanistic insight into OLM acquisition at the functional network level and offer an evidence-based framework for identifying target networks to enhance spatial memory through non-invasive brain stimulation.

neuroscience↗

bioRxiv2026

Rewiring vascular patterning through translational control in Arabidopsis

Plant vascular systems exhibit a wide developmental spectrum, from rigid woody tissues to soft, fleshy storage tissues. We show that increasing polyamine thermospermine transport into wild-type rootstocks, together with cytokinin, reprograms xylem identity from woody to fleshy in Arabidopsis. Our findings establish thermospermine as a mobile developmental signal and suggest a strategy for engineering plant vascular architecture.

plant biology↗

bioRxiv2025

Functionally Relevant and Reliable Brain Stimulation Targets for Enhancement of Novel Word-Learning

Linking word-forms and their meanings is central to language learning. Transcranial direct current stimulation (tDCS), has shown potential to enhance this process, but with variable effects. This study aimed to (1) identify reliable and functionally relevant tDCS target brain regions to enhance novel-word learning and (2) assess test-retest reliability (TRR) of behavioral and imaging outcomes. Twenty healthy individuals completed two functional magnetic resonance imaging (fMRI) sessions using parallel task versions. Participants learned picture-pseudoword associations across six learning blocks. Behavioral learning was analyzed using linear-mixed-models. Whole-brain and region-of-interest (ROI) analyses examined learning-related activity changes and their behavioral relevance. TRR was assessed using intraclass correlation coefficients (ICCs). Participants successfully acquired the novel-word forms, indexed by increased accuracy and faster latency across stages. Behavioral outcomes showed good-to-excellent TRR. The task elicited robust language-learning related activity and activity changes across stages were correlated with learning success. Task-related activity was variable, but voxels within significant clusters ([~]81%) and most ROIs showed moderate-to-excellent consistency. Power analyses confirmed a sufficient sample size for detecting the reported ICCs. Current modeling suggested that focal-tDCS can induce neurophysiologically relevant electrical field strength in the identified target regions. Hence, we identified accessible, reliable and functionally relevant cortical targets for enhancing novel-word learning. TRR results support the usefulness of the paradigm for future concurrent tDCS-fMRI research. Our study also outlines a general path towards optimization of brain stimulation studies by implementing an empirically informed approach for selecting reliable and relevant target regions and implementation of reliable experimental and imaging paradigms.

neuroscience↗

bioRxiv2025

Polarity-dependent modulation of sleep oscillations and cortical excitability in aging

During non-rapid eye movement (NREM) sleep, cortical slow oscillation (SO; <1 Hz) and thalamic sleep spindle activity (12-15 Hz) interact through precise phase coupling to support memory consolidation. Slow oscillatory transcranial direct current stimulation (so-tDCS) can modulate these oscillations. Traditionally, anodal so-tDCS is used to depolarize the cortex during SO up-states, thereby promoting SO activity and SO-spindle coupling. However, intracranial findings suggest that SO down-states, characterized by cortical hyperpolarization, can trigger thalamic spindle bursts. This raises the hypothesis that cathodal so-tDCS, by promoting hyperpolarization, could selectively enhance down-states and more effectively improve SO-spindle coupling. We tested this hypothesis in twenty-two healthy older adults, a population known to exhibit diminished NREM oscillatory activity. Each participant received cathodal, anodal, and sham so-tDCS in separate nap sleep sessions. We quantified SO and spindle characteristics, their temporal coupling, and cortical excitation/inhibition (E/I) balance using EEG spectral slope. We also assessed individual circadian preference (chronotype) as a potential moderator. We found that anodal so-tDCS improved SO-spindle synchrony, and increased spindle power over sham in participants with intermediate or evening chronotypes, while cathodal so-tDCS did not enhance these oscillatory measures compared to sham, despite prolonging SO down-states. Anodal stimulation also elevated E/I balance, indicating increased cortical excitability, whereas cathodal stimulation did not produce the anticipated opposite shift. In summary, anodal, but not cathodal so-tDCS, effectively enhanced thalamocortical interactions underlying memory consolidation. Furthermore, these findings highlight the importance of individual factors such as chronotype in brain stimulation responsiveness.

neuroscience↗

bioRxiv2022

Natural variation in Arabidopsis responses to Plasmodiophora brassicae reveals an essential role for RPB1

Despite the identification of clubroot resistance genes in various Brassica crops our understanding of the genetic basis of immunity to Plasmodiophora brassicae infection in the model plant Arabidopsis thaliana remains limited. To address this issue we performed a screen of 142 natural accessions and identified 11 clubroot resistant Arabidopsis lines. Genome wide association analysis identified several genetic loci significantly linked with resistance. Three genes from two of these loci were targeted for deletion by CRISPR/Cas9 mutation in resistant accessions Est-1 and Uod-1. Deletion of Resistance to Plasmodiophora brassicae 1 (RPB1) rendered both lines susceptible to the P. brassicae pathotype P1+. Further analysis of rpb1 knock-out Est-1 and Uod-1 lines showed that the RPB1 protein is required for activation of downstream defence responses, such as the expression of phytoalexin biosynthesis gene CYP71A13. RPB1 has no known functional domains or homology to previously characterised proteins. The clubroot susceptible Arabidopsis accession Col-0 lacks a functional RPB1 gene; when Col-0 is transformed with RPB1 expression driven by its native promoter it is capable of activating RPB1 expression in response to infection but this is not sufficient to confer resistance. Constitutive over-expression of RPB1 in Col-0 leads to drastically reduced growth and activation of stress-responsive genes. Furthermore, we found that transient expression of RPB1 in Nicotiana tabacum induced programmed cell death in leaves. We conclude that RPB1 is a critical component of the defence response to P. brassicae infection in Arabidopsis, acting downstream of pathogen recognition but required for the elaboration of effective resistance.

plant biology↗

bioRxiv2021

Towards optimization of oscillatory stimulation during sleep

BackgroundOscillatory rhythms during sleep such as slow oscillations (SO) and spindles, and most importantly their coupling, are thought to underlie processes of memory consolidation. External slow oscillatory transcranial direct current stimulation (so-tDCS) with a frequency of 0.75 Hz has been shown to improve this coupling and memory consolidation, however, effects varied quite markedly between individuals, studies, and species. Here, we aimed to determine how precisely the frequency of stimulation has to match the naturally occurring SO frequency in individuals to optimally improve SO-spindle coupling. Moreover, we systematically tested stimulation durations necessary to induce changes. MethodsWe addressed these questions by comparing so-tDCS with individualized frequency to standardized frequency of 0.75 Hz in a within-subject design with 28 older participants during napping while systematically varying stimulation train durations between 30 s, 2 min, and 5 min. ResultsStimulation trains as short as 30 s were sufficient to modulate the coupling between SOs and spindle activity. Contrary to our expectations, so-tDCS with standardized frequency indicated stronger aftereffects with regard to SO-spindle coupling compared to individualized frequency. Angle and variance of spindle maxima occurrence during the SO cycle were similarly modulated. ConclusionIn sum, short stimulation trains were sufficient to induce significant changes in sleep physiology allowing for more trains of stimulation, which provides methodological advantages and possibly even larger behavioral effects in future studies. With regard to individualized stimulation frequency, further options of optimization need to be investigated, such as closed-loop stimulation to calibrate stimulation frequency to the SO frequency at time of stimulation onset. Significance statementApplication of slow oscillatory transcranial direct current stimulation during sleep has been shown to enhance specific memory-relevant sleep parameters and memory performance after sleep, albeit with a high degree of variability. Here, we systematically explored two major stimulation parameters possibly accounting for this variability in humans: frequency and duration of stimulation. We found, contrary to our expectations, standardized frequency stimulation with 0.75 Hz being superior to individualized frequency stimulation in enhancing specific sleep parameters. Moreover short stimulation trains of 30 seconds were as effective as 5 min in modulating aftereffects. These are encouraging findings, implying methodological advantages as larger quantity of aftereffects data can be obtained within the same time window, which may also lead to enhanced behavioral stimulation effects.

neuroscience↗

bioRxiv2021

Interrelations between delta waves, spindles and slow oscillations in human NREM sleep and their functional role in memory

Certain neurophysiological characteristics of sleep, in particular slow oscillations (SO), sleep spindles, and their temporal coupling, have been well characterized and associated with human memory formation. Delta waves, which are somewhat higher in frequency and lower in amplitude compared to SO, have only recently been found to play a critical role in memory processing of rodents, through a competitive interplay between SO-spindle and delta-spindle coupling. However, human studies that comprehensively address delta waves, their interactions with spindles and SOs as well as their functional role for memory are still lacking. Electroencephalographic data were acquired across three naps of 33 healthy older human participants (17 female) to investigate delta-spindle coupling and the interplay between delta and SO-related activity. Additionally, we determined intra-individual stability of coupling measures and their potential link to the ability to form novel memories. Our results revealed weaker delta-spindle compared to SO-spindle coupling. Contrary to our initial hypothesis, we found that increased delta activity was accompanied by stronger SO-spindle coupling. Moreover, we identified the ratio between SO- and delta-nested spindles as the sleep parameter that predicted ability to form novel memories best. Our study suggests that SOs, delta waves and sleep spindles should be jointly considered when aiming to link sleep physiology and memory formation in aging. Significance statementInterrelations between delta waves, slow oscillations and sleep spindles have recently been causally linked to the balance between consolidation and forgetting in rats using optogenetics. In humans, SO-spindle coupling has been intensively investigated, but delta waves and their interaction with spindles were only studied jointly as SWA. Here we delineate the coupling of delta waves to spindles, investigate interactions of delta- and SO-related activity and investigate their role for the ability to form novel memories in healthy older individuals. Our results show differences as well as dependencies between SO- and delta-related activities including spindle coupling. Further, our results indicate that the ratio of SO- to delta-nested spindles might be the most informative sleep parameter for memory formation of older adults.

neuroscience↗