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Biology subjects

Mahmoudi, A.

Publications and source records attributed to Mahmoudi, A..

3 recordsLinked to original sources

Can predictive simulations provide insights for personalizing assistive wearable device design?

Optimizing assistive wearable devices is crucial for their efficacy and user adoption, yet state-of-the-art methods like Human-in-the-Loop Optimization (HILO) and biomechanical modeling face limitations. HILO is time-consuming and often restricted to optimizing control parameters, while inverse dynamics assumes invariant kinematics, which is unreliable for adaptive human-device interaction. Predictive simulation offers a powerful alternative, enabling computational exploration of design spaces. However, existing approaches often lack systematic optimization frameworks and rigorous validation against experimental data. To address this, we developed a Design Optimization Platform that integrates predictive simulations within a two-level optimization structure for personalizing assistive device design. This paper primarily validates the platforms predictive simulations against a publicly available dataset of the passive Biarticular Thigh Exosuit (BATEX), assessing its reliability. Our findings show that the model can sufficiently predict the kinematics and major muscle activations, except for the pelvis tilt and some biarticular muscles. The key finding is that successful identification of personalized optimal BATEX stiffness parameters needs acceptable prediction of metabolic cost trends, not their precise values. Our analysis further reveals that the models accuracy in predicting Vasti muscle activation in the baseline condition is a significant indicator of its success in predicting metabolic cost trends. This demonstrates that accurate prediction of performance trends is more important for effective simulation-based design optimization than perfect biomechanical accuracy, advancing targeted and efficient assistive device development.

bioengineering↗

Graded Hair Cell Ablation Reveals Functional Redundancy in the Mature Mouse Vestibular System

Inner ear hair cells are mechanoreceptors critical for hearing and balance. Damage to vestibular hair cells causes balance impairment, yet it is unclear whether hair cell loss correlates with vestibular dysfunction. In this study, we ablated hair cells in Pou4f3DTR/+ mice with diphtheria toxin (DT), and found a dose-dependent decrease in hair cell survival in both the macula and crista ampullaris, including loss of type I and II hair cells in the striolar/central and extrastriolar/peripheral regions. Responses to linear acceleration, measured by the translational vestibulo-ocular reflex (tVOR) and vestibular sensory evoked potential (VsEP), were intact with 25% or more hair cell survival in the macula, and diminished only when hair cell survival decreased further. By contrast, rotational vestibulo-ocular reflex (rVOR) responses were significantly reduced with [~]31% hair cell survival in the cristae. Further, single-unit recordings of vestibular afferents from cristae and maculae showed more irregular and reduced firing rates, but only those corresponding to cristae displayed reduced sensitivity to head rotation. Limited hair cell regeneration was observed in the extrastriolar/peripheral regions of both maculae and cristae 6 months post ablation, although no significant recovery of the VORs was observed. Thus, the adult mouse vestibular end organs display different degrees of redundancy, demonstrating robust responses to head rotation and linear acceleration despite loss of most hair cells.

neuroscience↗

StrongestPath: a Cytoscape application for protein-protein interaction analysis

BackgroundStrongestPath is a Cytoscape 3 application that enables to look for one or more cascades of interactions connecting two single or groups of proteins in a collection of protein-protein interaction (PPI) network or signaling network databases. When there are different levels of confidence over the interactions, it is able to process them and identify the cascade of interactions having the highest total confidence score. Given a set of proteins, StrongestPath can extract and show the network of interactions among them from the given databases, and expand the network by adding new proteins having the most interactions with highest total confidence to the current proteins. The application can also identify any activation or inhibition regulatory paths between two distinct sets of transcription factors and target genes. This application can be either used with a set of built-in human and mouse PPI or signaling databases, or any user-provided database for some organism. ResultsOur results on 12 signaling pathways from the NetPath database demonstrate that the application can be used for indicating proteins which may play significant roles in the middle of the pathway by finding the strongest path(s) in the PPI or signaling network. ConclusionEasy access to multiple public large databases, generating output in a short time, addressing some key challenges in one platform and providing a user-friendly graphical interface make the StrongestPath easy to use.

systems biology↗