Biology subjects

Maestre, F. T.

Publications and source records attributed to Maestre, F. T..

15 recordsLinked to original sources

bioRxiv2026

Rainfall-induced microbial resuscitation reveals functional decoupling across biocrust succession

Dryland ecosystems rely on infrequent rainfall pulses to activate soil microbial communities, yet the fraction and identity of microbes resuscitating after hydration remain unclear. We applied bioorthogonal non-canonical amino acid tagging coupled with fluorescence-activated cell sorting (BONCAT-FACS) and 16S rRNA gene sequencing to identify translationally active bacteria in early (L-BSC) and late (D-BSC) successional cyanobacteria-dominated biocrusts subjected to simulated rainfall under light and dark conditions. Our results reveal that only a small subset of the microbial community resumes activity within six hours, with higher active cell abundances in mature crusts. Microbial activity patterns were largely independent of light exposure and showed partial decoupling from total community composition, indicating that presence does not predict short-term function. These findings suggest that biocrust maturity shapes microbial activation dynamics and that functional responses to precipitation pulses are governed by a conserved pool of fast responders, informing predictions of dryland soil microbiome resilience under changing precipitation regimes.

ecology↗

bioRxiv2025

Diverse crop rotations off-set yield-scaled nitrogen losses via denitrification

Denitrification, a major source of gaseous nitrogen (N) emissions from agricultural soils, is influenced by management. Practices promoting belowground diversity are suggested to support sustainable agriculture, but their ability to modulate gaseous N-losses via denitrification remains inconclusive. To fill this knowledge gap, we sampled 106 cereal fields spanning a 3,000 km North-South gradient across Europe and compiled 56 associated climatic, soil, microbial and management variables. We found that increased denitrification was associated with higher proportion of time with crop cover over the last ten years. Denitrification rates were best predicted by microbial biomass and microbial functional guilds involved in N cycling, in particular denitrification. We also show that several diversification practices affect the variation in denitrification predictors, suggesting a trade-off between agricultural diversification and gaseous N-losses via denitrification. However, increased crop diversity in rotations improved yield-scaled denitrification, highlighting the potential of this practice to minimize N losses while contributing to sustainable food production.

ecology↗

bioRxiv2025

Lonely plants in arid land are functionally hyperdiverse

In Gross et al.1 we produced the largest ever standardized dryland plant trait database including 133,769 trait measurements from 301 perennial plant species surveyed across 326 plots and six continents. Our findings indicate that arid and hyper-arid drylands act as a global reservoir of plant phenotypic diversity, challenging the common assumption that harsh environmental conditions reduce plant trait diversity. Tordoni et al.2 speculate that the larger phenotypic diversity in harsh environments found in our study is overestimated and misinterpreted. The re-analyses presented here further confirm that the patterns we originally reported are robust, and thus that the concerns from Tordoni et al. are not well-founded and do not apply to our study. We stand for the main conclusions of our study and maintain that lonely plants in arid land are functionally hyperdiverse.

ecology↗

bioRxiv2023

Mycorrhizal fungi modulate tree diversity effects on nutrient dynamics

Species-specific differences in nutrient acquisition strategies allow for complementary use of resources among plants in mixtures, which may be further shaped by mycorrhizal associations. However, empirical evidence of these relationships is scarce, particularly for tree communities. We investigated the impact of tree species richness and mycorrhizal types, arbuscular mycorrhizal fungi (AM) and ectomycorrhizal fungi (EM), on the above- and belowground carbon (C), nitrogen (N), and phosphorus (P) dynamics. Soil and microbial biomass elemental pools did not strongly respond to tree species richness or mycorrhizal type. Tree species richness increased foliage C and P pools depending on mycorrhizal type. Additive partitioning analyses showed that net biodiversity effects for C, N, P pools in EM tree communities, and N pools in AM tree communities, were driven by selection effects, while mixtures of both mycorrhizal types were influenced by complementarity effects. Furthermore, tree species richness enhanced soil nitrate uptake over two years but had no impact on ammonium and phosphate levels. Our results indicate that positive effects of tree diversity on aboveground nutrient storage are mediated by complementary mycorrhizal strategies. Given the prevalence of anthropogenic impacts on tree species richness globally, these results may have important implications for reforestation of multifunctional forests.

ecology↗

bioRxiv2022

The global distribution and environmental drivers of the soil antibiotic resistome

BackgroundLittle is known about the global distribution and environmental drivers of key microbial functional traits such as antibiotic resistance genes (ARGs). Soils are one of Earths largest reservoirs of ARGs, which are integral for soil microbial competition, and have potential implications for plant and human health. Yet, their diversity and global patterns remain poorly described. Here, we analyzed 285 ARGs in soils from 1012 sites across all continents, and created the first global atlas with the distributions of topsoil ARGs. ResultsWe show that ARGs peaked in high latitude cold and boreal forests. Climatic seasonality and mobile genetic elements, associated with the transmission of antibiotic resistance, were also key drivers of their global distribution. Dominant ARGs were mainly related to multidrug resistance genes and efflux pump machineries. We further pinpointed the global hotspots of the diversity and proportions of soil ARGs. ConclusionsTogether, our work provides the foundation for a better understanding of the ecology and global distribution of the environmental soil antibiotic resistome.

ecology↗

bioRxiv2022

Towards understanding diversity, endemicity and global change vulnerability of soil fungi

Fungi play pivotal roles in ecosystem functioning, but little is known about their global patterns of diversity, endemicity, vulnerability to global change drivers and conservation priority areas. We applied the high-resolution PacBio sequencing technique to identify fungi based on a long DNA marker that revealed a high proportion of hitherto unknown fungal taxa. We used a Global Soil Mycobiome consortium dataset to test relative performance of various sequencing depth standardization methods (calculation of residuals, exclusion of singletons, traditional and SRS rarefaction, use of Shannon index of diversity) to find optimal protocols for statistical analyses. Altogether, we used six global surveys to infer these patterns for soil-inhabiting fungi and their functional groups. We found that residuals of log-transformed richness (including singletons) against log-transformed sequencing depth yields significantly better model estimates compared with most other standardization methods. With respect to global patterns, fungal functional groups differed in the patterns of diversity, endemicity and vulnerability to main global change predictors. Unlike -diversity, endemicity and global-change vulnerability of fungi and most functional groups were greatest in the tropics. Fungi are vulnerable mostly to drought, heat, and land cover change. Fungal conservation areas of highest priority include wetlands and moist tropical ecosystems.

ecology↗

bioRxiv2021

Vegetation structure determines cyanobacterial communities during soil development across global biomes

O_LISoil cyanobacteria play essential ecological roles and are known to experience large changes in their diversity and abundance throughout early succession. However, much less is known about how and why soil cyanobacterial communities change as soil develops from centuries to millennia, and the effects of aboveground vegetation on these communities. C_LIO_LIWe combined an extensive field survey including 16 global soil chronosequences across contrasting ecosystems (from deserts to tropical forests) with molecular analyses to investigate how the diversity and abundance of soil cyanobacteria under vegetation change during soil development from hundreds to thousands of years. C_LIO_LIWe show that, in most chronosequences, the abundance, species richness and community composition of soil cyanobacteria were relatively stable as soil develops (from centuries to millennia). Regardless of soil age, forest chronosequences were consistently dominated by non-photosynthetic cyanobacteria (Vampirovibrionia), while grasslands and shrublands were dominated by photosynthetic cyanobacteria. Chronosequences undergoing drastic vegetation shifts during soil development (e.g. transitions from grasslands to forests) experienced significant changes in the composition of soil cyanobacteria communities. C_LIO_LIOur results advance our understanding of the ecology of cyanobacterial classes, specially the understudied non-photosynthetic ones and highlight the key role of vegetation as a major driver of their temporal dynamics as soil develops. C_LI

ecology↗

bioRxiv2020

Temperature increases soil respiration across ecosystem types and soil development, but soil properties determine the magnitude of this effect

Soil carbon losses to the atmosphere, via soil heterotrophic respiration, are expected to increase in response to global warming, resulting in a positive carbon-climate feedback. Despite the well-known suite of abiotic and biotic factors controlling soil respiration, much less is known about how the magnitude of soil respiration responses to temperature changes over soil development and across contrasting soil properties. Here, we investigated the role of soil development stage and soil properties in driving the responses of soil heterotrophic respiration to increasing temperatures. We incubated soils from eight chronosequences ranging in soil age from hundreds to million years, and encompassing a wide range of vegetation types, climatic conditions, and chronosequences origins, at three assay temperatures (5, 15 and 25{degrees}C). We found a consistent positive effect of assay temperature on soil respiration rates across the eight chronosequences evaluated. However, soil properties such as organic carbon concentration, texture, pH, phosphorus content, and microbial biomass determined the magnitude of temperature effects on soil respiration. Finally, we observed a positive effect of soil development stage on soil respiration that did not alter the magnitude of assay temperature effects. Our work reveals that key soil properties alter the magnitude of the positive effect of temperature on soil respiration found across ecosystem types and soil development stages. This information is essential to better understand the magnitude of the carbon-climate feedback, and thus to establish accurate greenhouse gas emission targets.

ecology↗

bioRxiv2020

Relative humidity predominantly determines long-term biocrust-forming lichen survival under climate change

O_LIManipulative experiments show a decrease in dryland biological soil crust cover and altered species composition under climate change. However, the underlying mechanisms are not fully understood, and long-term interacting effects of different drivers are largely unknown due to the short-term nature of the studies conducted so far. C_LIO_LIWe addressed this gap and successfully parameterized a process-based model for the biocrust-forming lichen Diploschistes diacapsis as a common and globally distributed representative of biocrust communities to quantify how changing atmospheric CO2, temperature, rainfall amount and relative humidity affect its photosynthetic activity and cover. We also mimicked a long-term manipulative climate change experiment to understand the mechanisms underlying observed patterns in the field. C_LIO_LIThe model reproduced observed experimental findings: warming reduced lichen cover whereas less rainfall had no effect. This warming effect was caused by the associated decrease in relative humidity and non-rainfall water inputs as major water sources for lichens. Warming alone, however, increased cover because higher temperatures promoted photosynthesis during the cool morning hours with high lichen activity. When combined, climate variables showed non-additive effects on lichen cover, and fertilization effects of CO2 leveled off with decreasing levels of relative humidity. C_LIO_LISynthesis. Our results show that a decrease in relative humidity, rather than an increase in temperature may be the key factor for the survival of dryland lichens under climate change and that CO2 fertilization effects might be offset by a reduction in non-rainfall water inputs in the future. Because of a global trend towards warmer and thus drier air, this will affect lichen-dominated dryland biocrust communities and their role in regulating ecosystem functions, worldwide. C_LI

ecology↗

bioRxiv2020

Litter decomposition rates of biocrust-forming lichens are similar to that of vascular plants and are affected by warming in a semiarid grassland

Despite the high relevance of communities dominated by lichens, mosses and cyanobacteria living on the soil surface (biocrusts) for ecosystem functioning in drylands worldwide, no study to date has investigated the decomposition of biocrust-forming lichen litter in situ. Thus, we do not know whether the drivers of its decomposition are similar to those for plant litter (e.g., importance of abiotic degradation through UV radiation), the magnitude of lichen decomposition rates and whether they will be affected by climate change. Here we report results from a litter decomposition experiment carried out with two biocrust-forming lichens (Diploschistes diacapsis and Cladonia convoluta) in central Spain. We evaluated how lichen decomposition was affected by warming, rainfall exclusion and the combination of both. We also manipulated the incidence of UV radiation using mesh material that blocked 10% or 90% of incoming UV radiation. Our results indicate that lichens decompose as fast as some plants typical of the region (k~0.3) and that the chemical composition of their thallus drives litter decomposition rates. Warming increased decomposition rates of both lichen species, and mediated the effects of photodegradation. While UV exposure accelerated the decomposition of D. diacapsis, it slowed down that of C. convoluta. Our results indicate that biocrust-forming lichens can decompose in the field at a rate similar to that of vascular plants, and that this process will be affected by warming. Our findings further highlight the need of incorporating biocrusts into carbon cycling models to better understand and forecast climate change impacts on terrestrial biogeochemistry.

ecology↗

bioRxiv2019

Ecological niche differentiation in soil cyanobacterial communities across the globe

Cyanobacteria are key organisms in the evolution of life on Earth, but their distribution and environmental preferences in terrestrial ecosystems remain poorly understood. This lack of knowledge is particularly evident for two recently discovered non-photosynthetic cyanobacterial classes, Melainabacteria and Sericytochromatia, limiting our capacity to predict how these organisms and the important ecosystem functions they perform will respond to ongoing global change. Here, we conducted a global field survey covering a wide range of vegetation types and climatic conditions to identify the environmental factors associated with the distribution of soil cyanobacterial communities. Network analyses revealed three major clusters of cyanobacterial phylotypes, each one dominated by members of one of the extant classes of Cyanobacteria (Oxyphotobacteria, Melainabacteria and Sericytochromatia), suggesting that species within these taxonomic groups share similar environmental preferences. Melainabacteria appear mostly in acidic and humid ecosystems, especially forests, Oxyphotobacteria are prevalent in arid and semiarid areas, and Sericytochromatia are common in hyperarid oligotrophic environments. We used this information to construct a global atlas of soil cyanobacteria. Our results provide novel insights into the ecology and biogeography of soil cyanobacteria and highlight how their global distribution could change in response to increased aridity, a landmark feature of climate change in terrestrial ecosystems worldwide. Significance statementCyanobacteria have shaped the history of life on Earth and can be important photosynthesizers and nitrogen fixers in terrestrial ecosystems worldwide. The recent discovery of two non-photosynthetic classes has advanced our understanding of their evolution, but their distribution and environmental preferences remain poorly described. Using a global survey conducted across 237 locations on six continents, we identified three main groups of soil cyanobacteria with contrasting environmental preferences: acidic and humid ecosystems, arid and semiarid areas, and hyperarid oligotrophic ecosystems. We then constructed the first global atlas of soil cyanobacteria, an important advance in our understanding of the ecology and biogeography of these functionally important organisms.

ecology↗

bioRxiv2017

The interplay between facilitation and habitat type drive spatial vegetation patterns in global drylands

The size distribution of discrete plant patches (PSD), a common descriptor of the spatial patterns of vascular vegetation, has been linked to variations in land degradation and ecosystem functioning in drylands. However, most studies on PSDs conducted to date have focused on a single or a few study sites within a particular region. Therefore, little is know on the general typology and distribution of PSDs at the global scale, and on the relative importance of biotic and abiotic factors as drivers of their variation across geographical regions and habitat types. We analyzed 115 dryland plant communities from all continents except Antarctica to investigate the general typology of PSDs, and to assess the relative importance of biotic (plant cover, frequency of facilitation, soil amelioration, height of the dominant species) and abiotic (aridity and sand content) factors as drivers of PSDs across contrasting habitat types (shrublands and grasslands). We found that both power-law and lognormal PSDs were generally distributed regardless of the region of the world considered. The percentage of facilitated species in the community drives the emergence of power-law like spatial patterns in both shrublands and grasslands, although mediated by different mechanisms (soil and climatic amelioration, respectively). Other drivers of PSDs were habitat-specific: height of the dominant species and total cover were particularly strong drivers in shrublands and grasslands, respectively. The importance of biotic attributes as drivers of PSDs declined under the most arid conditions in both habitats. We observed that PSDs deviated from power law functions not only due to the loss of large, but also of small patches. Our results expand our knowledge about patch formation in drylands and the habitat-dependency of their drivers. They also highlight different ways in which facilitation may act on ecosystem functioning through the formation of plant spatial patterns.

ecology↗

bioRxiv2017

Species-specific adaptations determine how aridity and biotic interactions drive the assembly of dryland plant communities

O_LIDespite being a core ecological question, disentangling individual and interacting effects of plant-plant interactions, abiotic factors and species-specific adaptations as drivers of community assembly is challenging. Studies addressing this issue are growing rapidly, but they generally lack empirical data regarding species interactions and local abundances, or cover a narrow range of environmental conditions.\nC_LIO_LIWe analysed species distribution models and local spatial patterns to isolate the relative importance of key abiotic (aridity) and biotic (facilitation and competition) drivers of plant community assembly in drylands worldwide. We examined the relative importance of these drivers along aridity gradients and used information derived from the niches of species to understand the role that species-specific adaptations to aridity play in modulating the importance of community assembly drivers.\nC_LIO_LIFacilitation, together with aridity, was the major driver of plant community assembly in global drylands. Due to community specialization, the importance of facilitation as an assembly driver decreased with aridity, and became non significant at the border between arid and semiarid climates. Under the most arid conditions, competition affected species abundances in communities dominated by specialist species. Due to community specialization, the importance of aridity in shaping dryland plant communities peaked at moderate aridity levels.\nC_LIO_LISynthesis: We showed that competition is an important driver of community assembly even under harsh environments, and that the effect of facilitation collapses as driver of species relative abundances under high aridity because of the specialization of the species pool to extremely dry conditions. Our findings pave the way to develop more robust species distribution models aiming to predict the consequences of ongoing climate change on community assembly in drylands, the largest biome on Earth.\nC_LI

ecology↗

bioRxiv2017

Simulated Climate Change Affects How Biocrusts Modulate Infiltration And Desiccation Dynamics

Soil surface communities dominated by mosses, lichens and cyanobacteria (biocrusts) cover most of the soil surface between vegetation patches in drylands worldwide, and are known to affect soil wetting and drying after rainfall events. While ongoing climate change is already warming and changing rainfall patterns of drylands in many regions, little is known on how these changes may affect the hydrological behaviour of biocrust-covered soils. We used eight years of continuous soil moisture and rainfall data from a climate change experiment in central Spain to explore how biocrusts modify soil water gains and losses after rainfall events under simulated changes in temperature (2.5{o}C warming) and rainfall (33% reduction). Both rainfall amount and biocrust cover increased soil water gains after rainfall events, whereas experimental warming, rainfall intensity and initial soil moisture decreased them. Initial moisture, maximum temperature and biocrust cover, by means of enhancing potential evapotranspiration or soil darkening, increased the drying rates and enhanced the exponential behaviour of the drying events. Meanwhile, the warming treatment reduced the exponential behaviour of these events. The effects of climate change treatments on soil water gains and losses changed through time, with important differences between the first two years of the experiment and after five years since its setup. These effects were mainly driven by the important reductions in biocrust cover and diversity observed under warming. Our results highlight the importance of long term studies to understand soil moisture responses to ongoing climate change in drylands.

ecology↗

bioRxiv2017

Diversity Of Biocrust-Forming Cyanobacteria In A Semiarid Gypsiferous Site From Central Spain

Cyanobacteria are an important constituent of biocrusts, communities dominated by lichens, mosses and associated microorganisms, which are prevalent in drylands worldwide and that largely determine their functioning. Despite their importance, there are large gaps in our knowledge of cyanobacteria associated to biocrusts, particularly in areas such as the Mediterranean Basin. We studied the diversity of these cyanobacteria in a gypsiferous grassland from Central Spain using both morphological identification after cultivation and genetic analyses with the 16S rRNA gene. Eight different morphotypes were observed, most of them corresponding to filamentous and one of them to unicellular cyanobacteria. We found cyanobacterial genera typical of biocrust communities, such as Microcoleus, Schizothrix or Tolypothrix, and N-fixing cyanobacteria as Scytonema or Nostoc. Genetic information allowed us to identify cultures belonging to recently described genera such as Roholtiella, Nodosilinea and Mojavia. In this study we describe two new phylotypes of Microcoleus and Scytonema, which are key genera contributing to ecosystem functioning in biocrust-dominated ecosystems worldwide.

microbiology↗