Biology subjects

Lukas, J.

Publications and source records attributed to Lukas, J..

11 recordsLinked to original sources

bioRxiv2024

First records of invasive Vespa velutina nigrithorax Buysson, 1905 (Hymenoptera: Vespidae) and Megachile sculpturalis Smith, 1853 (Hymenoptera: Megachilidae) in Slovakia

Biological invasions are an increasing threat to ecosystems; early identification of invasive species and rigorous monitoring are prerequisites to minimize environmental damage. Currently, two large hymenopterans of Asian origin are spreading across Europe: the yellow-legged hornet Vespa velutina nigrithorax Buysson, 1905 and the giant resin bee Megachile sculpturalis Smith, 1853, populations of which have been gradually being discovered across Europe since 2004 and 2008, respectively. Considering the current distribution of both species in Europe, further spread through Central Europe is expected in recent years. In July 2024, the first record of M. sculpturalis was documented in Slovakia, followed by more reports from 11 localities. Less than two months later, the second invasive hymenopteran, V. velutina nigrithorax, was also detected. Utilising multiple methods, their nest was discovered as well. On-site observations showed that the yellow-legged hornets (workers) were active almost two days after colony eradication. The finding of both species was accompanied by an intensive campaign using citizen science.

zoology↗

bioRxiv2023

Repair of DNA double-strand breaks leaves heritable impairment to genome function

Upon DNA breakage, a genomic locus undergoes alterations in 3-D chromatin architecture to facilitate signaling and repair. While cells possess mechanisms to repair damaged DNA, it is unknown whether the surrounding chromatin is restored to its naive state. We show that a single DNA double-strand break (DSB) within a topologically-associated domain (TAD) harboring conformation-sensitive genes causes lasting chromatin alterations, which persist after completion of DNA repair and feature structural changes, chromatin compaction and loss of local RNA species. Unexpectedly, these newly-acquired features of post-repair chromatin are transmitted to daughter cells and manifest as heritable impairments of gene expression. These findings uncover a hitherto concealed dimension of DNA breakage, which we term post-repair chromatin fatigue, and which confers heritable impairment of gene function beyond DNA repair.

cell biology↗

bioRxiv2023

Increased thermal tolerance under anoxic conditions in an extremophile fish from hot sulfur springs in Mexico

The thermal ecology of ectotherm animals has gained considerable attention in the face of human induced climate change. Particularly in aquatic species the experimental assessment of critical thermal limits (CTmin and CTmax) may help to predict possible effects of global warming on habitat suitability and ultimately species survival. Here we present data on the thermal limits of two endemic and endangered extremophile fish species, inhabiting a geothermally-heated and sulfur-rich spring system in Southern Mexico: The sulfur molly (Poecilia sulphuraria) and the widemouth gambusia (Gambusia eurystoma). Besides physiological challenges induced by toxic hydrogen sulfide and related severe hypoxia during the day, water temperatures have been previously reported to exceed those of nearby clearwater streams. We now present temperature data for various locations and years in the sulphur spring complex and conducted laboratory thermal tolerance tests (CTmin and CTmax) both under normoxic as well as sever hypoxic conditions in both species. Average CTmax limits did not differ between species under normoxic conditions. Surprisingly P. sulphuraria was found to reach a higher critical temperature (CTmax = 43.2{degrees}C) when tested under hypoxic conditions, while G. eurystoma on average had a lower CTmax when oxygen was absent. Based on this data we calculated both species thermal safety margins and used a TDT (thermal death time) model framework to relate our experimental data to observed temperatures in the natural habitat. Our findings suggest, that both species live near their thermal limits during the annual dry season and are locally already exposed to temperatures above their critical thermal limits. We discuss these findings in the light of possible physiological adaptions of the sulfur-adapted fish species and the anthropogenic threats for this unique system.

ecology↗

bioRxiv2022

Experienced social partners hinder learning performance in naive clonal fish

Social learning is widely assumed to enhance individual learning efficiency, particularly when naive observers have access to skilled demonstrators, yet the conditions under which this assumption holds remain poorly understood. Here, we investigated how individual learning is influenced by the skill level of social partners. We predicted that naive individuals would benefit from observing experienced conspecifics, yet found the opposite: trained partners significantly impaired naive individuals learning performance, while trained individuals remained unaffected by their partners skill level. We conducted experiments in near-identical individuals, using the all-female clonal Amazon molly (Poecilia formosa) to test whether these fish can learn an operant foraging task, whether individuals differ consistently in learning ability, and whether partner skill level influences learning performance. Using an operant conditioning paradigm over five days, half of the fish were trained to locate food inside a cylinder, whereas the remaining individuals received food randomly dispersed within their tank. Trained individuals subsequently visited the cylinder more frequently than randomly fed individuals and exhibited consistent individual differences in learning performance. In a second phase, fish were allowed to observe a conspecific while individual training was either continued (for trained individuals) or initiated (for naive individuals). We found that trained individuals did not benefit from the presence of a partner, regardless of the partners proficiency, but consistently outperformed naive individuals. In contrast, naive individuals showed reduced learning performance when paired with experienced partners, but not with naive partners. Together, our results indicate that Amazon mollies achieve this foraging task through individual learning and exhibit stable differences in learning ability. Moreover, social learning depends on both the learners own skill level and that of the social partner, such that observing an experienced conspecific may, in some cases, impede rather than enhance learning.

animal behavior and cognition↗

bioRxiv2022

Discovery of a new but established population of the guppy in Germany

Feral populations of tropical fish species in temperate climates like Central Europe are a rare but repeatedly observed phenomenon. Due to the influence of industrial or geothermal heated water, released tropical fish may be able to survive harsh winter conditions. Here we characterize a newly discovered thermally polluted river, with an established population of the guppy (Poecilia reticulata) co-occurring with native species. Through a mark-recapture approach, we estimated the population size of the guppies close to the warm water inflow to be around 2000 individuals during summer and we further provide descriptive demographics of this population which allow us to assume it is well established in that river. Further, we found some of the sampled specimen being parasitized by Camallanus roundworms, thus showing the guppies host potential for this genus of internal parasites. The popularity and widespread distribution of guppies as ornamental fish often leads to their intentional or unintentional release into the wild where they are often pioneer species in anthropogenically heavily modified habitats. Guppies threaten native species through niche competition and transmission of diseases. Accordingly, early awareness and knowledge on the status of non-native populations is crucial for effective management strategies.

ecology↗

bioRxiv2020

Consistent behavioural syndromes across seasons in an invasive freshwater fish

Understanding the linkage between behavioral types and dispersal tendency has become a pressing issue in light of global change and biological invasions. Here, we explore whether dispersing individuals exhibit behavioral types that differ from those remaining in the source population. We investigated a feral population of guppies (Poecilia reticulata) that undergoes a yearly range shift cycle. Guppies are among the most widespread invasive species in the world, but in temperate regions these tropical fish can only survive in winter-warm freshwaters. Established in a thermally-altered stream in Germany, guppies are confined to a warm-water influx in winter, but can spread to peripheral parts as these become thermally accessible. We sampled fish from the source population and a winter-abandoned site in March, June and August. Fish were tested for boldness, sociability and activity involving open-field tests including interactions with a robotic social partner. Guppies differed consistently among each other in all three traits. Behavioral trait expression in the source population differed across seasons, however, we could not detect differences between source and downstream populations. Instead, all sampled populations exhibited a remarkably stable behavioral syndrome between boldness and activity despite strong seasonal changes in water temperature and associated environmental factors. We conclude that random drift (opposed to personality-biased dispersal) is a more likely dispersal mode for guppies, at least in the investigated stream. In the face of fluctuating environments, guppies seem to be extremely effective in keeping behavioral expressions constant, which could help explain their successful invasion and adaptation to disturbed habitats.Competing Interest StatementThe authors have declared no competing interest.View Full Text

animal behavior and cognition↗

bioRxiv2019

The dynamic equilibrium of nascent and parental MCMs safeguards replicating genomes

The MCM2-7 (minichromosome maintenance) protein complex is a DNA unwinding motor required for the eukaryotic genome duplication1. Although a huge excess of MCM2-7 is loaded onto chromatin in G1 phase to form pre-replication complexes (pre-RCs), only 5-10 percent are converted into a productive CDC45-MCM-GINS (CMG) helicase in S phase - a perplexing phenomenon often referred to as the MCM paradox2. Remaining pre-RCs stay dormant but can be activated under replication stress (RS)3. Remarkably, even a mild reduction in MCM pool results in genome instability4, 5, underscoring the critical requirement for high-level MCM maintenance to safeguard genome integrity across generations of dividing cells. How this is achieved remains unknown. Here, we show that for daughter cells to sustain error-free DNA replication, their mothers build up a stable nuclear pool of MCMs both by recycling of chromatin-bound MCMs (referred to as parental pool) and synthesizing new MCMs (referred to as nascent pool). We find that MCMBP, a distant MCM paralog6, ensures the influx of nascent MCMs to the declining recycled pool, and thereby sustains critical levels of MCMs. MCMBP promotes nuclear translocation of nascent MCM3-7 (but not MCM2), which averts accelerated MCM proteolysis in the cytoplasm, and thereby fosters assembly of licensing-competent nascent MCM2-7 units. Consequently, lack of MCMBP leads to reduction of nascent MCM3-7 subunits in mother cells, which translates to poor MCM inheritance and grossly reduced pre-RCs formation in daughter cells. Unexpectedly, whereas the pre-RC paucity caused by MCMBP deficiency does not alter the overall bulk DNA synthesis, it escalates the speed and asymmetry of individual replisomes. This in turn increases endogenous replication stress and renders cells hypersensitive to replication perturbations. Thus, we propose that surplus of MCMs is required to safeguard replicating genomes by modulating physiological dynamics of fork progression through chromatin marked by licensed but inactive MCM2-7 complexes.

cell biology↗

bioRxiv2018

Social networks in the presence and absence of visual cues

We compared the social dynamics of two populations of the live-bearing Atlantic molly (Poecilia mexicana) that live in adjacent habitats with very different predator regimes: cave mollies that inhabit a low-predation environment inside a sulfidic cave with a low density of predatory water bugs (Belostoma sp.), and mollies that live directly outside the cave (henceforth called \"surface\" mollies) in a high-predation environment with a high density of fish-eating birds. We filmed the social interactions of marked fish in both environments and analysed their social network dynamics using a Markov model under two different fish densities of 12 and 6 fish per 0.36 m2. As expected, surface mollies spent overall much more time social than cave mollies. This difference in overall social time was a result of surface mollies being less likely to discontinue social contact (once they had a social partner) and being more likely to resume social contact (once alone) than cave mollies. Interestingly surface mollies were also less likely to leave a current social partner than cave mollies. At low density, mollies (in both environments) were expected to show reduced social encounters which should dramatically change their social dynamics. Surface mollies, however, displayed an ability to maintain their social dynamics at low density (primarily by reducing the convex polygon spanned by the group) which was not observed in cave mollies. Despite the fact that we only compared two populations, our data provide a mechanistic explanation for density compensations of social dynamics that have also been observed in other fish species and give an example of how comparisons between the social dynamics of different populations can be made that go beyond conventional network analyses.

animal behavior and cognition↗

bioRxiv2018

Guppies prefer to follow large (robot) leaders irrespective of own size

Body size is often assumed to determine how successful an individual can lead others with larger individuals being more likely to lead than smaller ones. However, direct evidence for such a relation is scarce. Furthermore, even if larger individuals are more likely to lead, body size correlates often with specific behavioral patterns (e.g., swimming capacity) and it is thus unclear whether larger individuals are more often followed than smaller ones because they are larger or because they behave in a certain way. To control for behavioral differences among differentially-sized leaders, we used biomimetic robotic fish - Robofish - of different sizes. Robofish is accepted as a conspecific by live guppies (Poecilia reticulata) and provides standardized behaviors irrespective of its size. We specifically asked whether larger leaders are preferentially followed when behavior is controlled for and whether the preferences of followers depend on their own body size or their risk taking behavior ( boldness). We found that live guppies followed larger Robofish leaders closer than smaller ones and this pattern was independent of the followers own body size as well as risk-taking behavior. This is the first study that shows a bigger is better pattern in leadership in shoaling fish that is fully independent of behavioral differences between differentially-sized leaders and followers own size and personality.

animal behavior and cognition↗

bioRxiv2018

Using a robotic fish to investigate individual differences in social responsiveness in the guppy

Responding towards the actions of others is one of the most important behavioral traits whenever animals of the same species interact. Mutual influences among interacting individuals may modulate the social responsiveness seen and thus makes it often difficult to study the level and variation of individuality in responsiveness. Here, biomimetic robots (BRs) that are accepted as conspecifics but controlled by the experimenter can be a useful tool. Studying the interactions of live animals with BRs allows pinpointing the live animals level of responsiveness by removing confounding mutuality. In this paper, we show that live guppies (Poecilia reticulata) exhibit consistent differences among each other in their responsiveness when interacting with a biomimetic fish robot - Robofish - and a live companion. It has been repeatedly suggested that social responsiveness correlates with other individual behavioral traits like risk-taking behavior ( boldness) or activity level. We tested this assumption in a second experiment. Interestingly, our detailed analysis of individual differences in social responsiveness using the Robofish, suggests that responsiveness is an independent trait, not part of a larger behavioral syndrome formed by boldness and activity.

animal behavior and cognition↗

bioRxiv2017

Mutational signatures reveal the role of RAD52 in p53-independent p21 driven genomic instability

BackgroundGenomic instability promotes evolution and heterogeneity of tumors. Unraveling its mechanistic basis is essential to design appropriate therapeutic strategies. In a recent study we reported an unexpected oncogenic property of p21WAF1/Cip1 showing that its chronic expression, in a p53-deficient environment, causes genomic instability by deregulating the replication licensing machinery.\n\nResultsExtending on this work we now demonstrate that p21WAF1/Cip1 can further fuel genomic instability by suppressing the repair capacity of low and high fidelity pathways that deal with nucleotide abnormalities. Consequently, fewer single nucleotide substitutions (SNSs) occur, while formation of highly deleterious DNA double-strand breaks (DSBs) is enhanced, crafting a characteristic mutational signature landscape. Guided by the mutational signatures formed, we found at the mechanistic level that the DSBs were repaired by Rad52-dependent Break-Induced Replication (BIR) and Single-Strand Annealing (SSA). Conversely, the error-free synthesis-dependent strand annealing (SDSA) repair route was deficient. Surprisingly, Rad52 was activated transcriptionally in an E2F1-dependent manner, rather than post-translationally as is common for DNA repair factor activation.\n\nConclusionsOur results signify the importance of mutational signatures as guides to disclose the \"repair history\" leading to genomic instability. In this vein, following this approach we unveiled how chronic p21WAF1/Cip1 expression rewires the repair process, identifying Rad52 as a source of genomic instability and a candidate therapeutic target.

cancer biology↗