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Loughlin, F. E.

Publications and source records attributed to Loughlin, F. E..

2 recordsLinked to original sources

Allosteric modulation of TIA-1 phase separation by double serine phosphorylation

In response to diverse harmful stimuli, eukaryotic cells generate cytoplasmic stress granules (SGs), mainly composed of mRNAs and RNA-binding proteins (RBPs). RBPs are fine-tuned by a diverse array of post-translational modifications (PTMs), with important consequences for the assembly, dynamics and clearance of SGs. One of the best characterized SG nucleators is the RBP T-cell intracellular antigen 1 (TIA-1), although knowledge about the structural and functional impact of its identified PTMs is very limited. TIA-1 is organized into three RNA-recognition motifs (RRMs) and a C-terminal prion-related domain (PRD) that drives its phase separation from the cytosol. Here, we analyzed the effect of TIA-1 double phosphorylation in RRM3, at serines 198 and 199. Microscopic observations revealed an increased propensity of the phosphomimetic TIA-1 S198/199E to undergo liquid-liquid phase separation (LLPS) and self-assemble into SGs independently of stress stimuli. Our computational simulations, supported by NMR data, have suggested that such phosphorylations promote the formation of a {beta}-hairpin motif at the beginning of the PRD. Moreover, the ALS-associated mutation V283M in TIA-1 was predicted to lead to the formation of an aberrant structure in the {beta}-hairpin region, highlighting the fine balance between physiological and pathogenic TIA-1 phase transition, and the importance of a better understanding of the molecular mechanisms underlying the liquid demixing of this RBP.

biophysics↗

The solution structure of Dead End bound to AU-rich RNA reveals an unprecedented mode of tandem RRM-RNA recognition required for mRNA repression

Dead End (DND1) is an RNA-binding protein essential for germline development through its role in post-transcriptional gene regulation. The molecular mechanisms behind selection and regulation of its targets are unknown. Here, we present the solution structure of DND1s tandem RNA Recognition Motifs (RRMs) bound to AU-rich RNA. The structure reveals how an NYAYUNN element is specifically recognized, reconciling seemingly contradictory sequence motifs discovered in recent genome-wide studies. RRM1 acts as a main binding platform, including atypical extensions to the canonical RRM fold. RRM2 acts cooperatively with RRM1, capping the RNA using an unusual binding pocket, leading to an unprecedented mode of tandem RRM-RNA recognition. We show that the consensus motif is sufficient to mediate upregulation of a reporter gene in human cells and that this process depends not only on RNA binding by the RRMs, but also on DND1s double-stranded RNA binding domain (dsRBD), which is dispensable for target binding in cellulo. Our results point to a model where DND1 target selection is mediated by a non-canonical mode of AU-rich RNA recognition by the tandem RRMs and a role for the dsRBD in the recruitment of effector complexes responsible for target regulation.

molecular biology↗