Biology subjects

Lopez-Vaamonde, C.

Publications and source records attributed to Lopez-Vaamonde, C..

7 recordsLinked to original sources

bioRxiv2026

Genetic erosion and projected habitat loss in the protected Alpine moth Actias isabellae galliaegloria (Lepidoptera: Saturniidae)

O_LIMontane and specialist insects are particularly vulnerable to habitat loss and climate change. The Spanish Moon Moth (Actias isabellae), a rare and protected species, hosts an isolated Alpine population (subspecies galliaegloria) whose conservation status remains unclear. C_LIO_LIWe combined Restriction-site Associated DNA sequencing (RADseq) and Ecological Niche Modelling (ENM) to assess its genetic diversity, population structure, and environmental vulnerability. C_LIO_LIGenomic analyses revealed extremely low genetic diversity and inbreeding in the Alpine subspecies, consistent with a historical bottleneck, reducing adaptive potential. C_LIO_LISpecies distribution models predict a major contraction of suitable habitat by 2050 due to rising temperatures and declines in its primary host, Scots pine (Pinus sylvestris). C_LIO_LIThese findings highlight the compounded risks posed by genetic impoverishment and habitat loss, emphasizing the urgent need for targeted conservation measures. C_LIO_LIOur study demonstrates the value of integrating genomic and ecological approaches to evaluate extinction risk and guide management strategies for montane specialist insects under rapid environmental change. C_LI

evolutionary biology↗

bioRxiv2025

From forest decline to salvage logging: cascading impacts on saproxylic beetle diversity

Understanding the cascading effects of forest decline on saproxylic communities is fundamental for optimizing the management of disturbed forests toward biodiversity conservation objectives. We postulated that the nature and intensity of cascading pathways would vary along decline gradients, encompassing stages from stand decline to mortality and subsequent salvage logging, as mediated by shifts in habitat conditions and resource availability. This study was conducted across three representative European forest contexts: fir forests in the French Pyrenees, spruce forests in the Bavarian Alps, and oak forests in the lowlands of the Loire Valley. Within these systems, we assessed how the taxonomic and functional -diversity of saproxylic beetles responded to variations in both the diversity and density of deadwood and tree-related microhabitats (TreMs). Our analyses identified key cascading effects of stand decline and mortality that were shaped by the considered beetle guild and by the forest type, reflecting tree species-specific disturbance legacies. Stand decline and mortality produced distinct responses within saproxylic beetle assemblages, as different successional guilds preferentially utilized either dying or dead trees. The overall influence of decline processes was positive in conifer-dominated forests. TreMs played a central role in mediating cascading processes structuring saproxylic beetle communities throughout the forest decline continuum. The increase in TreM heterogeneity associated with stand decline or mortality enhanced saproxylic diversity, with exposed wood and trunk injuries identified as particularly influential microhabitats. Snags and large deadwood elements, especially in spruce forests, and deadwood diversity further contributed to sustaining high levels of beetle diversity. Conversely, salvage logging exerted detrimental effects on numerous guilds, primarily through reductions in TreM diversity, decreased TreM trait dispersion, and the depletion of saproxylic TreMs. Given the pronounced context dependency of the processes driving these cascading community dynamics, and considering the increasing frequency, severity, and spatial extent of forest disturbances and global forest decline, it is imperative to integrate this complexity into management and conservation frameworks. Addressing these mechanisms with greater precision will be critical for maintaining functional biodiversity within rapidly changing forest ecosystems.

ecology↗

bioRxiv2025

ERGA-BGE genome of the Spanish Moon Moth Graellsia isabellae Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive

The reference genome of the Spanish Moon Moth, Graellsia isabellae, will be of great importance for evolutionary and conservation genomics. Firstly, this reference genome, alongside phylogenomic analyses, may finally resolve the longstanding debate regarding the scientific name of this iconic species--whether it should be Graellsia isabellae (Graells, 1849) or Actias isabellae (Graells, 1849). Secondly, the reference genome will be instrumental in the genetic monitoring of this protected species, enabling advanced methods to calculate contemporary population genomics estimates. The genome was assembled into 31 contiguous chromosomal pseudomolecules (Z chromosome included). The mitochondrial genome has also been assembled and is 15,247 bp in length. This chromosome-level assembly encompasses 0.56 Gb, composed of 38 contigs and 32 scaffolds, with contig and scaffold N50 values of 18.9 Mb and 20.4 Mb, respectively.

genomics↗

bioRxiv2023

Non-destructive DNA metabarcoding of arthropods using collection medium from passive traps

BackgroundBroad-scale monitoring of arthropods is often carried out with passive traps (e.g. Malaise traps) that can collect thousands of specimens per sample. The identification of individual specimens requires time and taxonomic expertise, limiting the geographical and temporal scale of research and monitoring studies. DNA metabarcoding of bulk-sample homogenates is faster and has been found to be efficient and reliable, but is destructive and prevents a posteriori validation of species occurrences and/or relative abundances. Non-destructive DNA metabarcoding from the collection medium has been applied in a limited number of studies, but further tests of efficiency are required in a broader range of circumstances to assess the consistency of the method. MethodsWe quantified the detection rate of arthropod species when applying non-destructive DNA metabarcoding with a short (127-bp) fragment of mitochondrial COI on two types of passive traps and collection media: 1) water with monopropylene glycol (H2O-MPG) used in window-flight traps (WFT, 53 in total); 2) ethanol with monopropylene glycol (EtOH-MPG) used in Malaise traps (MT, 27 in total). We then compared our results with those obtained for the same samples using morphological identification (for WFTs) or destructive metabarcoding of bulk homogenate (for MTs). This comparison was applied as part of a larger study of arthropod species richness in silver fir (Abies alba) stands across a range of climate-induced tree dieback levels and forest management strategies. ResultsOf the 53 H2O-MPG samples from WFTs, 16 produced no metabarcoding results, while the remaining 37 samples yielded 77 arthropod MOTUs in total. None of those MOTUs were shared species with the 389 morphological taxa (343 of which were Coleoptera) obtained from the same traps. Metabarcoding of 26 EtOH-MPG samples from MTs detected more arthropod MOTUs (233) and insect orders (11) than destructive metabarcoding of homogenate (146 MOTUs, 8 orders). Arachnida and Collembola were more diverse in EtOH-MPG samples, but Hymenoptera, Coleoptera and Lepidoptera were less represented than in homogenate. Overall, MOTU richness per trap similar for EtOH-MPG (21.81 MOTUs) than for homogenate (32.4 MOTUs). Arthropod communities from EtOH-MPG and homogenate metabarcoding were relatively distinct, with 162 MOTUs (53%) unique to the collection medium and only 71 MOTUs (23%) present in both treatments. Finally, collection medium did not reveal any significant changes in arthropod richness along a disturbance gradient in silver fir forests. We conclude that DNA metabarcoding of collection medium can be used to complement homogenate metabarcoding in inventories to favour the detection of soft-bodied arthropods like spiders.

molecular biology↗

bioRxiv2022

Phylogenomics Illuminates the Evolutionary History of Wild Silkmoths in Space and Time (Lepidoptera: Saturniidae)

AO_SCPLOWBSTRACTC_SCPLOWWild silkmoths (Saturniidae) are one of the most emblematic and most studied families of moths. Yet, the absence of a robust phylogenetic framework based on a comprehensive taxonomic sampling impedes our understanding of their evolutionary history. We analyzed 1,024 ultraconserved elements (UCEs) and their flanking regions to infer the relationships among 338 species of Saturniidae representing all described subfamilies, tribes, and genera. We investigated systematic biases in genomic data and performed dating and historical biogeographic analyses to reconstruct the evolutionary history of wild silkmoths in space and time. Using Gene Genealogy Interrogation, we showed that saturation of nucleotide sequence data blurred our understanding of early divergences and first biogeographic events. Our analyses support a Neotropical origin of saturniids, shortly after the Cretaceous-Paleogene extinction event (ca 64.0 [stem] - 52.0 [crown] Ma), and two independent colonization events of the Old World during the Eocene, presumably through the Bering Land Bridge. Early divergences strongly shaped the distribution of extant subfamilies as they showed very limited mobility across biogeographical regions, except for Saturniinae, a subfamily now present on all continents but Antarctica. Overall, our results provide a framework for in-depth investigations into the spatial and temporal dynamics of all saturniid lineages and for the integration of their evolutionary history into further global studies of biodiversity and conservation. Rather unexpectedly for a taxonomically well-known family such as Saturniidae, the proper alignment of taxonomic divisions and ranks with our phylogenetic results leads us to propose substantial rearrangements of the family classification, including the description of one new subfamily and two new tribes.

evolutionary biology↗

bioRxiv2021

Tracing the invasion of a leaf-mining moth in the Palearctic through DNA barcoding of historical herbaria

Historical herbaria are valuable sources of data in invasion biology. Here we study the invasion history of the lime leaf-miner, Phyllonorycter issikii, by surveying over 15 thousand herbarium specimens of limes (Tilia spp.) collected in the Palearctic during last 253 years (1764-2016). The majority of herbarium specimens with the pests mines (89%) originated from East Asia (1859-2015), whereas remaining 11% of specimens with the mines came from Europe, European Russia and Western Siberia (1987-2015). These results support the hypothesis of a recent Ph. issikii invasion from Eastern to Western Palearctic. Single molecule real-time sequencing of the COI barcode region of 93 archival larvae and pupae (7-162 years old) dissected from the mines on historical herbaria allowed to distinguish between Ph. issikii and Ph. messaniella, a polyphagous species rarely feeding on Tilia, which mines were found in herbarium from Europe dated by 1915-1942. We discovered 25 haplotypes of Ph. issikii, of which 16 haplotypes were present solely in East Asia, and revealed wide distribution of the species in China. Six haplotypes shared between Eastern and Western Palearctic suggest the contribution of Ph. issikii populations from the Russian Far East, China and Japan to the westward invasion.

ecology↗

bioRxiv2021

Climate-induced forest dieback drives compositional change in insect communities that is concentrated amongst rare species

Marked decline in insect species richness, abundance and biomass have recently been quantified in Europe. We metabarcoded 224 Malaise-trap samples to investigate whether drought-induced forest dieback and subsequent salvage logging have an impact on flying insects (ca. 3000 insect species) in silver fir Pyrenean forests. We found no evidence that climate-induced forest dieback impacted species richness of flying insects but revealed compositional turnover patterns consistent with those seen during natural forest succession, given that the key covariates explaining compositional variation were canopy openness versus microhabitat diversity and deadwood amount at local and landscape scales, respectively. Importantly, most change was driven by rare species. In contrast, observed levels of salvage logging did not explain change in species richness or composition. Hence, although forest dieback appears to cause changes in species assemblages mimicking natural forest succession, it also increases the risk of catastrophic loss of rare species through homogenization of environmental conditions.

ecology↗