Biology subjects

Lohr, M.

Publications and source records attributed to Lohr, M..

6 recordsLinked to original sources

bioRxiv2026

Near-future warming amplifies natural heatwave impacts and reorganizes freshwater communities

Future climate change may reshape ecological communities not only by increasing mean temperature, but also by altering the consequences of increasingly frequent heatwaves. Predicting these effects requires understanding how background warming interacts with short heatwaves in natural communities, where responses can arise through direct thermal stress and species interactions. We tested this using 32 outdoor freshwater mesocosms exposed to sustained near-future warming while capturing a documented natural heatwave. Warming raised temperature maxima that exceeded the thermal threshold of the pond snail, a main grazer in the community. Warmed communities showed lower grazer abundance, increased macrophyte and insect herbivore abundance, reduced phytoplankton biomass, and lower zooplankton density. Complementary assays showed that heatwave-level temperatures promoted macrophyte growth and reduced grazer survival, whereas reduced zooplankton performance mainly reflected indirect warming effects via food-web cascades. Thus, near-future warming can amplify natural heatwave impacts by exceeding consumer thermal thresholds and propagating through species interactions.

ecology↗

bioRxiv2025

Maladaptive aphid-induced transgenerational plasticity is overcome in nature

Inherited stress responses are widely assumed to be adaptive for plants by preparing offspring for renewed attack. To date, it remains unclear whether and under which conditions these responses may benefit the attacker rather than the host. Studying the interaction between the aphid Rhopalosiphum nymphaeae and its native host, the aquatic duckweed Spirodela polyrhiza, we show that aphids can either benefit or suffer from inherited stress responses, depending on metabolite identity and ecological context. In multigenerational clonal plant lineages maintained indoors, ancestral aphid herbivory increased aphid reproduction and reduced plant fitness under renewed attack, indicating that the net effect of inherited stress responses can favor the herbivore. However, not all inherited responses benefited the aphid: using genetic and chemical manipulations, we found that transgenerational priming of jasmonate enhanced aphid performance, whereas transgenerational priming of tyramine reduced it. Notably, tyramine--but not jasmonates--accumulated to higher levels across generations also in large mesocosms outdoors, albeit only within and not across growing seasons. Together, our results reveal that inherited responses of hosts can favor the attackers and highlight ecological context and life-cycle transitions as key determinants of the persistence, duration, and ecological consequences of inherited stress responses.

ecology↗

bioRxiv2024

Identifying the gene responsible for NPQ reversal in Phaeodactylum tricornutum

Algae such as diatoms and haptophytes have distinct photosynthetic pigments from plants, including a novel set of carotenoids. This includes a primary xanthophyll cycle comprised of diadinoxanthin and its de-epoxidation product diatoxanthin that enables the switch between light harvesting and non-photochemical quenching (NPQ)-mediated dissipation of light energy. The enzyme responsible for the reversal of this cycle was previously unknown. Here, we identified zeaxanthin epoxidase 3 (ZEP3) from Phaeodactylum tricornutum as the candidate diatoxanthin epoxidase. Knocking out the ZEP3 gene caused a loss of rapidly reversible NPQ following saturating light exposure. This correlated with the maintenance of high concentrations of diatoxanthin during recovery in low light. Xanthophyll cycling and NPQ relaxation were restored via complementation of the wild type ZEP3 gene. The zep3 knockout strains showed reduced photosynthetic rates at higher light fluxes and reduced specific growth rate in variable light regimes, likely due to the mutant strains becoming locked in a light energy dissipation state. We were able to toggle the level of NPQ capacity in a time and dose dependent manner by placing the ZEP3 gene under the control of an inducible promoter. Identification of this gene provides deeper understanding of the diversification of photosynthetic control in algae compared to plants and suggests a potential target to improve the productivity of industrial-scale cultures.

plant biology↗

bioRxiv2024

Both major xanthophyll cycles present in nature can provide Non-Photochemical Quenching in the model diatom Phaeodactylum tricornutum

Xanthophyll cycling contributes to photoprotection by regulating Non-Photochemical Quenching (NPQ). While most photosynthetic eukaryotes including land plants use the violaxanthin cycle, some algae like diatoms and haptophytes rely on the diadinoxanthin cycle for photoprotection. These algae also contain minor amounts of violaxanthin cycle pigments, serving as precursors in xanthophylls biosynthesis. Both cycles are catalyzed by the enzymes violaxanthin de-epoxidase (VDE) and zeaxanthin epoxidase (ZEP). Here, we characterized the role of VDE and different ZEP-encoding paralogs (ZEP2 and ZEP3) in the model diatom Phaeodactylum tricornutum. While knockout of VDE and ZEP3 significantly impaired the diadinoxanthin cycle, lack of ZEP2 led to sustained accumulation of the violaxanthin cycle instead of diadinoxanthin cycle pigments under high irradiance, with no negative effect on NPQ capacity. We demonstrate that both major xanthophyll cycles present in nature can function with comparable efficiency within the same species, offering a new perspective on the evolution of xanthophyll-mediated photoprotection.

plant biology↗

bioRxiv2024

Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, that are under considerable threat from climate change. Despite their ecological and evolutionary importance, this phylogenetic group, which is very distantly related to animals and land plants, is still poorly characterised at the genome level. Here we analyse 60 new genomes that include species from all the major brown algal orders. Comparative analysis of these genomes indicated the occurrence of several major events coinciding approximately with the emergence of the brown algal lineage. These included marked gain of new orthologous gene families, enhanced protein domain rearrangement, horizontal gene transfer events and the acquisition of novel signalling molecules and metabolic pathways. The latter include enzymes implicated in processes emblematic of the brown algae such as biosynthesis of the alginate-based extracellular matrix, and halogen and phlorotannin biosynthesis. These early genomic innovations enabled the adaptation of brown algae to their intertidal habitats. The subsequent diversification of the brown algal orders tended to involve loss of gene families, and genomic features were identified that correlated with the emergence of differences in life cycle strategy, flagellar structure and halogen metabolism. Analysis of microevolutionary patterns within the genus Ectocarpus indicated that deep gene flow between species may be an important factor in genome evolution on more recent timescales. Finally, we show that integration of large viral genomes has had a significant impact on brown algal genome content and propose that this process has persisted throughout the evolutionary history of the lineage.

genomics↗

bioRxiv2020

A multilayered post-GWAS assessment on genetic susceptibility to pancreatic cancer

Pancreatic cancer (PC) is a complex disease in which both non-genetic and genetic factors interplay. To-date, 40 GWAS hits have been associated with PC risk in individuals of European descent, explaining 4.1% of the phenotypic variance. Here, we complemented a classical new PC GWAS (1D) with spatial autocorrelation analysis (2D) and Hi-C maps (3D) to gain additional insight into the inherited basis of PC. In-silico functional analysis of public genomic information allowed prioritization of potentially relevant candidate variants. We replicated 17/40 previous PC-GWAS hits and identified novel variants with potential biological functions. The spatial autocorrelation approach prioritized low MAF variants not detected by GWAS. These were further expanded via 3D interactions to 54 target regions with high functional relevance. This multi-step strategy, combined with an in-depth in-silico functional analysis, offers a comprehensive approach to advance the study of PC genetic susceptibility and could be applied to other diseases.

genetics↗