Biology subjects

Lipsman, V.

Publications and source records attributed to Lipsman, V..

4 recordsLinked to original sources

bioRxiv2025

Algal Betaine Triggers Bacterial Hydrogen Peroxide Production that Promotes Algal Demise

Hydrogen peroxide (H2O2) plays various roles in the ocean, acting as a signaling molecule at low concentrations and causing oxidative stress when accumulated. While many marine microbes produce H2O2, its role in microbial interactions remains unclear. Here, we used transcriptomics, genetics, and metabolomics to study H2O2 dynamics in the interaction between Emiliania huxleyi algae and Phaeobacter inhibens bacteria. We found that H2O2 levels rise during algal death and that bacterial H2O2 production triggers this demise. Manipulating H2O2 levels shifted the outcome of the interaction. We also uncovered a link between H2O2 and betaine metabolism: aging algae release betaine, which promotes bacterial H2O2 production and, in turn, accelerates algal death. Genes involved in H2O2 and betaine metabolism were upregulated in environmental samples from an algal bloom. Together, our findings identify H2O2 and betaine as key molecules that modulate algal-bacterial interactions, potentially impacting microbial dynamics in marine ecosystems.

microbiology↗

bioRxiv2024

Increased Nutrient Levels Enhance the Bacterial Contribution to an Algal-Bacterial Extracellular Matrix

Microbial aggregation is central in environmental processes, such as marine snow and harmful marine mucilage events. Nutrient enrichment positively correlates with microbial aggregation. This correlation is largely attributed to the overgrowth of microalgae and the overproduction of agglomerating exopolysaccharides (EPS). However, recent studies highlight the significant contribution of bacterial EPS to algal-bacterial aggregation. Here, using controlled laboratory experiments and environmental metatranscriptomic analysis, we investigate the impact of nutrient enrichment on bacterial EPS production, while bacteria are in the context of their algal hosts. Our findings demonstrate a marked increase in bacterial EPS production in response to an increase of inorganic phosphorus and nitrogen levels, both in the lab and in the environment. These results highlight the interplay between nutrient regimes, bacterial physiology, and microbial aggregation in marine ecosystems and emphasize gaps in our understanding regarding the bacterial role in environmental processes that involve microbial aggregation.

microbiology↗

bioRxiv2023

Bacteria Contribute Exopolysaccharides to an Algal-Bacterial Joint Extracellular Matrix

Marine ecosystems are influenced by phytoplankton aggregation, which affects processes like marine snow formation and harmful events such as marine mucilage outbreaks. Phytoplankton secrete exopolymers, creating an extracellular matrix (ECM) that promotes particle aggregation. This ECM attracts heterotrophic bacteria, providing a nutrient-rich and protective environment. In terrestrial environments, bacterial colonization near primary producers relies on attachment and the formation of multidimensional structures like biofilms. Bacteria were observed attaching and aggregating within algal-derived exopolymers, but it is unclear if bacteria produce an ECM that contributes to this colonization. This study, using Emiliania huxleyi algae and Phaeobacter inhibens bacteria in an environmentally relevant model system, reveals a shared algal-bacterial ECM scaffold that promotes algal-bacterial aggregation. Algal exudates play a pivotal role in promoting bacterial colonization, stimulating bacterial exopolysaccharide (EPS) production, and facilitating a joint ECM formation. A bacterial biosynthetic pathway responsible for producing a succinoglycan-like compound contributing to bacterial ECM formation is identified. Genes from this pathway show increased expression in algal-rich environments. These findings highlight the underestimated role of bacteria in aggregate-mediated processes in marine environments, offering insights into algal-bacterial interactions and ECM formation, with implications for understanding and managing disturbances like marine mucilage events.

microbiology↗

bioRxiv2021

Dormant phages communicate to control exit from lysogeny

Temperate bacterial viruses (phages) can transition between lysis - replicating and killing the host, and lysogeny - existing as dormant prophages while keeping the host viable. It was recently shown that upon invading a naive cell, some phages communicate using a peptide signal, termed arbitrium, to control the decision of entering lysogeny. Whether communication can also serve to regulate exit from lysogeny (known as phage induction) remains unclear. Here we show that arbitrium-coding prophages continue to communicate from the lysogenic state by secreting and sensing the arbitrium signal. Signaling represses DNA-damage dependent phage induction, enabling prophages to reduce induction rate when surrounded by other lysogens. We show that the mechanism by which DNA damage and communication are integrated differs between distantly related arbitrium-coding phages. Additionally, signaling by prophages tilts the decision of nearby infecting phages towards lysogeny. Altogether, we find that phages use small molecule communication throughout their entire life-cycle to measure the abundance of lysogens in the population, thus avoiding wasteful attempts at secondary infections when they are unlikely to succeed.

microbiology↗