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Biology subjects

Lin, M.-C.

Publications and source records attributed to Lin, M.-C..

3 recordsLinked to original sources

The phosphorylation of Pak1 by Erk1/2 for cell migration requires Arl4D acting as a scaffolding protein

Activation of extracellular signal-regulated kinases 1 and 2 (Erk1/2) at the plasma membrane typically results in their translocation to other intracellular sites for substrate targeting. This targeting requires scaffolding proteins to bring Erk1/2 and their substrates together. In the case of platelet-derived growth factor (PDGF)-induced signaling that activates Erk1/2 to phosphorylate Pak1 for cell migration, Erk1/2 remain at the plasma membrane. Thus, it has been unclear in this case whether a scaffolding protein is needed for substrate targeting by Erk1/2. The small GTPase Arf-like protein (Arl) 4D also promotes cell migration by targeting Pak1 to the plasma membrane. However, as this recruitment also results in the phosphorylation of Pak1, it has been unclear how this phosphorylation is achieved. Furthermore, because both Erk1/2 and Arl4D promote the role of Pak1 in cell migration, the relationship between these two processes has also been unclear. Addressing these outstanding questions, we show that Arl4D acts as a scaffolding protein by recruiting Erk1/2 and Pak1 to the plasma membrane for their assembly into a protein complex. Our findings identify Arl4D as a novel regulator of Erk1/2, reveal a conserved role for scaffolding proteins in substrate targeting by Erk1/2, as well as uncovering a previously unknown interplay among Arl4D, Erk1/2, and Pak1. Moreover, as all these factors are known to be involved in cell migration, we have shed new mechanistic insights into how this fundamental cellular process occurs.

cell biology↗

An overview of GabRat edge disruption and its new extensions for unbiased quantification of disruptive camouflaging patterns using randomization technique

Disruptive colorations are camouflaging patterns that use contrasting colorations to interrupt the continuously of objects edge and disturb the observers visual recognition. The GabRat method has been introduced and widely used to quantify the strength of edge disruption. The original GabRat method requires a composite image where a target object is placed on a particular background. It computes the intensities of frequency components parallel and perpendicular to the edge direction at each edge point using Gabor filters, and summarize the ratios of these two intensities around the perimeter of the shape. However, we found that the original GabRat method has an issue which produces false signals and biases to overestimating the GabRat value depending on the edge angle. Here, we introduce GabRat-R, which can diminish that angle dependency using Gabor filters with randomized base angles. Additionally, we developed GabRat-RR, which iteratively places a target object on a background with random positions and rotation angles to average the effects of the heterogeneity and anisotropy of background. Compared with the original GabRat, our GabRat-R and GabRat-RR programs run more efficiently using multithreading techniques. GabRat-R and GabRat-RR were freely available in Natsumushi 2.0 software of the authors website.

evolutionary biology↗

Multifaceted roles of rice ABA/stress-induced intrinsically disordered proteins in augmenting drought resistance

Water deficit stress causes devastating loss of crop yield worldwide. Improving crop drought resistance has become an urgent issue. Here we report that a group of abscisic acid (ABA)/drought stress-induced monocot-specific, intrinsically disordered, and highly proline-rich proteins, REPETITIVE PROLINE-RICH PROTEINS (RePRPs), play pivotal roles in drought resistance in rice seedlings. Rice ectopically expressing RePRPs outlived wild-type rice under extreme drought conditions primarily due to two underlying mechanisms. First, RePRP reduces water loss by decreasing stomata conductance in shoot. In addition, RePRP overexpression enhances the levels of extracellular water barriers such as lignin and suberin, primarily in the root vascular bundle. Several groups of genes involved in lignin biosynthesis, especially the wall-bound peroxidase responsible for the final assembly of the lignin network, were induced by RePRP. Second, overexpression of RePRP leads to lowered root osmotic potential. Root cell osmotic pressure was more negative in rice plants overexpressing RePRP2 than wild-type plants, and the concentration of a key osmolyte, proline, was enhanced. Furthermore, the protein levels of two aquaporins that are important for drought stress tolerance were elevated. Hence, ABA/stress-induced RePRP expression leads to several beneficial traits of drought resistance, including lower water loss rate upon dehydration and higher root water use efficiency under drought conditions. This group of unique stress proteins may be an important target for technology development in enhancing drought stress resistance in cereals.

plant biology↗