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Biology subjects

Lim, K. Y.

Publications and source records attributed to Lim, K. Y..

3 recordsLinked to original sources

CDK9 interacts with a RanGTP-NEMP1-Importin β complex to regulate erythroid enucleation

Erythroid enucleation is the final stage of erythroid terminal differentiation and involves the separation of an orthochromatic erythroblast into two daughter cells; a pyrenocyte containing the extruded nucleus, and a reticulocyte that will become a red blood cell. Our previous work identified CDK9 as a regulator of erythroid enucleation that appears to act independently of its known role in regulating RNA polymerase II transcription, suggesting the potential for a new CDK9 role. Using a co-immunoprecipitation and mass spectrometry approach, we identified the interactome of CDK9 in differentiating erythroblasts. We show that CDK9 interacts with a RanGTP-NEMP1-Importin-{beta} complex during erythroid terminal differentiation, and inhibition of importin-{beta} in erythroblasts blocks erythroid enucleation. Using imaging analysis and functional assays of enucleating erythroblasts, we show that CDK9 and importin-{beta} co-locate at a critical site of activity opposite to the nucleus before nuclear extrusion and we describe a novel finding that physically links CDK9 and importin-{beta} activity prior to CaM/Ca2+ signalling and subsequent F-actin activity to achieve enucleation. Key PointsO_LIImportin-{beta} physically interacts with CDK9 in erythroid cells and is a novel regulator of erythroid enucleation C_LIO_LICDK9 and importin-{beta} are required upstream of CaM/Ca2+ signalling to enable nuclear extrusion C_LI

cell biology↗

Neural basis of collective social behavior during environmental challenge

Humans and animals have a remarkable capacity to collectively coordinate their behavior to respond to environmental challenges. However, the underlying neurobiology remains poorly understood. Here, we found that groups of mice self-organize into huddles at cold ambient temperature during the thermal challenge assay. We found that mice make active (self-initiated) and passive (partner-initiated) decisions to enter or exit a huddle. Using microendoscopic calcium imaging, we found that active and passive decisions are encoded distinctly within the dorsomedial prefrontal cortex (dmPFC). Silencing dmPFC activity in some mice reduced their active decision-making, but also induced a compensatory increase in active decisions by non-manipulated partners, conserving the groups overall huddle time. These findings reveal how collective behavior is implemented in neurobiological mechanisms to meet homeostatic needs during environmental challenges.

neuroscience↗

Laocoön: a tool for high-throughput automated cell counting

STRUCTURED ABSTRACTO_ST_ABSMotivationC_ST_ABSThere are current programs and plugins that automatically count the number of cells in a given image. However, many of these processes are not entirely automatic, as they require user input to specify a region of interest and are also frequently inaccurate. ResultsThis project presents laocoon, a Python package specifically designed to automatically and efficiently count the number of fluorescently-labelled cells in images. This package not only allows for reliable cell counting, but returns the proportion of cells in each cell cycle relative to all the cells in the DAPI channel, which is currently used for research purposes, but could ultimately be utilized for clinical purposes. Availability and ImplementationThis package, its corresponding execution instructions, and further information about the underlying algorithms, are currently available in the GitHub repository https://github.com/edukait/laocoon under the MIT license and can be run on the command terminal of any operating system. Alternatively, laocoon is available in the Python Package Index (PyPi), so the user can use the pip command to immediately download the package. Contactkaitlin.y.lim@gmail.com

bioinformatics↗