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Levi, V.

Publications and source records attributed to Levi, V..

3 recordsLinked to original sources

Pair correlation function analysis revealed different nuclear translocation mechanisms for glucocorticoid receptor's monomeric and dimeric forms

Glucocorticoids are among the most widely prescribed drugs globally due to their potent anti-inflammatory and immunosuppressive actions. These effects are primarily mediated by the glucocorticoid receptor (GR), a ligand-activated transcription factor that translocates from the cytoplasm to the nucleus to regulate hundreds of genes. Although nuclear entry is a prerequisite for its genomic response, the mechanisms governing this process remain unresolved; specifically, whether the receptor translocates as a monomer or a dimer remains a subject of significant controversy. Here, we employed the pair correlation function (pCF) approach to quantify the nuclear translocation of single fluorescent GR molecules in live cells. This minimally invasive method identifies correlations between intensity fluctuations generated by molecules moving from the cytoplasm into the nucleus. Our results demonstrate that GRs quaternary structure and conformation modulate GR transport. While GR monomers rely exclusively on passive diffusion, GR dimers also utilize the microtubule-dynein machinery for active transport, proving that dimerization can precede nuclear import. Furthermore, the perinuclear vimentin network facilitates faster translocation by constraining actively transported dimers near nuclear pores. Collectively, our work reconciles contradicting reports regarding GR stoichiometry during import by demonstrating that both monomers and dimers translocate, albeit through distinct mechanisms. Importantly, these results reopen the door for a microtubule-dependent, heterocomplex-independent model of GR translocation, suggesting that the cytoskeleton is an integral, yet overlooked, component of the GR signaling pathway.

biophysics↗

A new method to quantify the spatiotemporal localization of SnRK1.1

Maintaining energy homeostasis is a major challenge for plants in the current context of climate change. The Sucrose-non fermenting 1 (SNF1)-related kinase 1 (SnRK1) complex, a member of the SNF1-AMP-activated protein kinase (AMPK)-SnRK1 family of kinase complexes, is a central player in the regulation of cell energy homeostasis. The -subunit of the complex, which possesses kinase activity and is known as SnRK1.1 or KIN10, plays a role in sensing energy status and coordinating metabolic reprogramming to counter any energy imbalance. The discovery of a dual and dynamic intracellular distribution of SnRK1.1 suggests that the activity and function of SnRK1 might be regulated by spatiotemporal changes. To investigate the spatiotemporal distribution of SnRK1.1, we developed a protocol to quantify its intracellular distribution using fluorescence confocal images acquired along the z-axis in plants expressing SnRK1.1-eGFP. Using the open-source software Fiji/ImageJ, we calculated the ratio between nuclear and non-nuclear SnRK1.1 fractions and defined this as the N/ER index. We validated our method by analyzing the response of SnRK1.1 to photosynthesis inhibition by DCMU, including changes in protein levels and phosphorylation status. In addition, comparison with results obtained using a commercial software-based approach confirmed the compatibility of the N/ER index with different segmentation and quantification tools. Originally designed for leaf tissue images, this protocol can be broadly applied to assess the role of intracellular spatiotemporal changes in a wide range of kinases or fluorescently tagged recombinant proteins. Finally, SnRK1.1 intracellular distribution may also serve as a proxy to assess changes in cellular energy status. One sentence summaryNew method to track SnRK1.1 distribution and changes in plant cell energy status

plant biology↗

Hallmarks of glucocorticoid receptor condensates involvement in transcription regulation

Several proteins necessary for mRNA production concentrate in intranuclear condensates, which are proposed to affect transcriptional output. The glucocorticoid receptor (GR) is a ligand-activated transcription factor that regulates the expression of hundreds of genes relevant to many physiological and pathological processes. As with all members of the steroid receptor family, GR forms condensates of unknown function. Here, we examine whether GR condensates are involved in transcription regulation using Airyscan super-resolution microscopy and nano-antibodies targeting initiation and elongating states of RNA polymerase II (Pol2). We observed subpopulations of GR condensates colocalizing with initiating and, surprisingly, elongating Pol2 foci. The analysis of GR mutants with different transcriptional outputs suggests a correlation between condensate formation capability and transcription initiation. Moreover, the number of GR molecules within initiation and elongation condensates appears to be linked to transcriptional activity. Taken together, our data suggests an involvement of GR condensates in transcription initiation and elongation. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=141 SRC="FIGDIR/small/623561v1_ufig1.gif" ALT="Figure 1"> View larger version (46K): org.highwire.dtl.DTLVardef@969a77org.highwire.dtl.DTLVardef@176fcfborg.highwire.dtl.DTLVardef@dae13dorg.highwire.dtl.DTLVardef@1f96c3b_HPS_FORMAT_FIGEXP M_FIG C_FIG

biophysics↗