Levesque, R. | Search bioRxiv

bioRxiv2026

Amino Sugar Metabolism with AgaSY Coordinates Carbon Catabolism, Fimbrial Regulation, and Pathogenesis in Uropathogenic E. coli

Uropathogenic Escherichia coli (UPEC) exploit alternative carbon sources in order to adapt to the nutrient-limited urinary tract. While glucose is often scarce in healthy human urine, UPEC express a variety of sugar transport and catabolic systems that promote fitness during infection. In this study, we identify the agaSY genes in UPEC strain CFT073 as essential for the catabolism of the amino sugars N-acetyl-galactosamine (GalNAc or Aga) and galactosamine (GalN or Gam) and for the efficient use of additional amino sugars and carbon sources. Deletion of agaSY not only abolished Aga utilization but also impaired catabolism of multiple carbon sources including amino acids and sugars tested using phenotypic arrays. The {Delta}agaSY mutant exhibited significantly reduced type 1 fimbriae production, reduced biofilm formation, and increased motility, suggesting a link between amino sugar metabolism and the regulation of bacterial surface structures. Loss of agaSY did not affect growth and adherence to bladder cells and increased expression of genes encoding F9 fimbriae. Furthermore, the {Delta}agaSY mutant was significantly attenuated for bladder and kidney colonization in a murine urinary tract infection model, while complementation restored urinary tract colonization. The results indicate that a combination of deficiencies in nutrient acquisition, altered carbon metabolism, and regulation of virulence-associated factors contributes to reduced urinary tract colonization. Our findings highlight the interplay between metabolic flexibility and virulence regulation, as well as the central role that amino sugar metabolism plays in UPEC pathogenesis.

microbiology↗

bioRxiv2024

Major changes in gene expression between strains of diapausing and non-diapause spruce budworm despite little evidence of genetic divergence

To survive harsh winter conditions, many insects enter a state of dormancy called diapause which allows them to withstand extreme temperatures and lack of food. When diapause is induced, insects enter a state of arrested development and low metabolic rate. Because diapause and environmental conditions are closely linked, variation within and between species in diapause induction, depth, and duration is extremely common. Studies investigating the genetic underpinnings of diapause tend to focus on either different populations and/or environmental variation, which runs the risk of confounding the genetic signal either due to isolation-by-distance or variation in environmental conditions. We use the eastern spruce budworm (Choristoneura fumiferana) to circumvent these issues and investigate within-population variation in diapause. C. fumiferana usually diapauses as second instar larvae, but a small subset of individuals does not diapause and instead continues through development. This non-diapause phenotype can be selected to create a non-diapause strain. Here, we present a chromosome-level assembly of such a non-diapause strain, and compare it to an earlier published genome assembly of the diapause strain. We did not find evidence of major chromosome rearrangements, indicating that the genetic variation between strains is likely small and multi-genic. Gene expression comparisons between the strains indicate major gene expression changes, where genes associated with glycolysis and environmental signaling processing increase in expression in the diapause strain. Lastly, we found that gene expression diverges halfway through the first instar, and not before, indicating that the signal to induce diapause happens early in the first instar. Significance statementThe ability to enter diapause is a crucial adaptation for many insects to survive cold winters. The genetic underpinnings of the diapause phenotype has been the target of many investigations. However, many of these studies focus on variation in diapause on between geographic regions or changes in environmental conditions, which can lead to confounding factors. Here, we focus on within-population variation in diapause in the eastern spruce budworm, with two strains established from the same source population that vary in their ability to induce diapause. We present a chromosome level assembly of the non-diapause strain, and report that genetic changes between the diapause and the non-diapause line are likely small and involve multiple loci. Gene expression differences were extensive, and mostly associated with mechanisms to avoid freezing. This work sets the stage to further investigate how minimal genetic changes can lead to large-scale phenotypic changes as impactful as diapause.

genetics↗