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Biology subjects

Leung, W. S.

Publications and source records attributed to Leung, W. S..

3 recordsLinked to original sources

Reduced Pupil-Linked Arousal Marks Implicit Memory for Complex Auditory Sequences

Observers rapidly form long-lasting implicit memories for recurring sensory patterns, supporting adaptive behaviour through learning of environmental contingencies. Here we tested how such memories interact with neuromodulatory systems that regulate arousal--whether implicit familiarity increases arousal through retrieval-related processes or instead decreases arousal via more efficient sensory processing. We examined these competing accounts using complex auditory tone-pip sequences in which a subset of patterns recurred approximately every three minutes. One group of participants (N=30) actively detected transitions from random to regular structure, whereas a second group (N=40) heard the same sequences while performing a decoy task. Consistent with prior work, recurring regular sequences elicited faster reaction times in the active group, confirming the formation of implicit memory. Subsequently, both groups listened to previously encountered regular patterns (REGr) and matched novel regular patterns (REGn) while pupil diameter was recorded. Across groups, REGr sequences evoked significantly smaller pupil dilations than REGn sequences, indicating attenuated arousal for familiar patterns. This reduction was sustained until sequence offset in the active group but was transient in the exposure group, suggesting that task demands during exposure shape the stability of pupil-linked memory expression. Importantly, the REGr-REGn pupil difference did not correlate with explicit post-session recognition, demonstrating that the effect was not driven by conscious awareness. Together, these findings identify pupil dynamics as a robust physiological marker of learned auditory structure and show that implicit auditory sequence memory attenuates arousal. The results support predictive processing accounts in which familiarity reduces uncertainty and, consequently, neuromodulatory drive. Significance StatementHumans rapidly acquire implicit memories for recurring sounds, yet how such memories influence arousal during subsequent exposure remains poorly understood. Using pupillometry, we show that implicitly remembered auditory sequences evoke reduced pupil-linked arousal relative to matched novel sequences, even when listeners are unaware that the patterns have been previously experienced. This effect dissociates from explicit recognition, which typically yields the opposite "old/new" pattern of larger pupil responses to familiar items. Together, these findings establish pupil dynamics as a sensitive, non-invasive marker of implicit auditory memory and support predictive processing accounts in which familiarity reduces uncertainty and, consequently, neuromodulatory drive.

neuroscience↗

SENSV: Detecting Structural Variations with Precise Breakpoints using Low-Depth WGS Data from a Single Oxford Nanopore MinION Flowcell

Structural variation (SV) is a major cause of genetic disorders. In this paper, we show that low-depth (specifically, 4x) whole-genome sequencing using a single Oxford Nanopore MinION flow cell suffices to support sensitive detection of SV, in particular, pathogenic SV for supporting clinical diagnosis. Existing SV calling software, when using 4x ONT WGS data, often fails to detect pathogenic SV especially in the form of long deletion, terminal deletion, duplication, and unbalanced translocation. Our new SV calling software SENSV is able to achieve high sensitivity for all types of SV and a breakpoint precision typically {+/-}100 bp, both features are important for clinical concerns. The improvement achieved by SENSV stems from several new algorithms. We evaluated SENSV and other software using both real and simulated data. The former was based on 24 patient samples, each diagnosed with a genetic disorder. SENSV found the pathogenic SV in 22 out of 24 cases (all heterozygous, size from hundreds of Kbp to a few Mbp), reporting breakpoints within 100 bp of the true answers. No existing software can detect the pathogenic SV in more than 10 out of 24 cases, even when the breakpoint requirement is relaxed to {+/-}2,000 bp.

bioinformatics↗

Cross-reactive antibody response between SARS-CoV-2 and SARS-CoV infections

The World Health Organization has recently declared the ongoing outbreak of COVID-19, which is caused by a novel coronavirus SARS-CoV-2, as pandemic. There is currently a lack of knowledge in the antibody response elicited from SARS-CoV-2 infection. One major immunological question is concerning the antigenic differences between SARS-CoV-2 and SARS-CoV. We address this question by using plasma from patients infected by SARS-CoV-2 or SARS-CoV, and plasma obtained from infected or immunized mice. Our results show that while cross-reactivity in antibody binding to the spike protein is common, cross-neutralization of the live viruses is rare, indicating the presence of non-neutralizing antibody response to conserved epitopes in the spike. Whether these non-neutralizing antibody responses will lead to antibody-dependent disease enhancement needs to be addressed in the future. Overall, this study not only addresses a fundamental question regarding the antigenicity differences between SARS-CoV-2 and SARS-CoV, but also has important implications in vaccine development.

microbiology↗